Hb_002357_060

Information

Type -
Description -
Location Contig2357: 65709-66979
Sequence    

Annotation

kegg
ID cic:CICLE_v10006112mg
description hypothetical protein
nr
ID XP_006422308.1
description hypothetical protein CICLE_v10006112mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4RMP3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006112mg PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein strawberry notch isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24644: 65648-118033 , PASA_asmbl_24645: 65936-85441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002357_060 0.0 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
2 Hb_005648_010 0.0702841953 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
3 Hb_000367_090 0.0721193123 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
4 Hb_023001_040 0.0739265564 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
5 Hb_004880_150 0.0788358668 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
6 Hb_000179_270 0.0792497292 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
7 Hb_000167_010 0.0815975532 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000363_190 0.083483994 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
9 Hb_002477_290 0.0837306956 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
10 Hb_000046_170 0.0837877964 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
11 Hb_010174_150 0.0873170454 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_002811_100 0.089470315 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
13 Hb_000347_450 0.0917878103 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
14 Hb_000035_390 0.0926784057 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
15 Hb_011224_160 0.0930997756 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
16 Hb_001828_180 0.0931153912 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
17 Hb_007472_070 0.0937090899 - - cir, putative [Ricinus communis]
18 Hb_010775_040 0.0944070836 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
19 Hb_000025_190 0.0948654699 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
20 Hb_132880_040 0.0948944064 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002357_060 Hb_002357_060 Hb_005648_010 Hb_005648_010 Hb_002357_060--Hb_005648_010 Hb_000367_090 Hb_000367_090 Hb_002357_060--Hb_000367_090 Hb_023001_040 Hb_023001_040 Hb_002357_060--Hb_023001_040 Hb_004880_150 Hb_004880_150 Hb_002357_060--Hb_004880_150 Hb_000179_270 Hb_000179_270 Hb_002357_060--Hb_000179_270 Hb_000167_010 Hb_000167_010 Hb_002357_060--Hb_000167_010 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_005648_010--Hb_004880_150 Hb_000115_150 Hb_000115_150 Hb_005648_010--Hb_000115_150 Hb_000025_190 Hb_000025_190 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_000046_170 Hb_000046_170 Hb_000367_090--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000367_090--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000367_090--Hb_000227_160 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_023001_040--Hb_000167_010 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_004880_150--Hb_000025_190 Hb_000087_070 Hb_000087_070 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52809 7.41796 7.03551 14.3852 3.95383 5.7644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.41605 11.2873 6.02162 15.8406 12.0457

CAGE analysis