Hb_002360_020

Information

Type -
Description -
Location Contig2360: 42881-44072
Sequence    

Annotation

kegg
ID rcu:RCOM_0927080
description Inner membrane protein yrbE, putative
nr
ID AIU41662.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8L4R0
description Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1
trembl
ID A0A097P9U0
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI14 PE=2 SV=1
Gene Ontology
ID GO:0043190
description protein trigalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002360_020 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_012098_190 0.2106776068 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_050334_010 0.280043969 - - -
4 Hb_001519_210 0.2846155483 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
5 Hb_000307_230 0.2883558236 - - -
6 Hb_032531_010 0.2885760619 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_054467_010 0.2960962581 - - -
8 Hb_000940_190 0.2999190354 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
9 Hb_099723_010 0.3011903005 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_005439_010 0.3013758088 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
11 Hb_000764_040 0.301717809 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_106815_010 0.3019384367 - - hypothetical protein, conserved [Eimeria acervulina]
13 Hb_012295_020 0.3027088666 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
14 Hb_002869_070 0.3037232572 - - -
15 Hb_012071_010 0.3056109386 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_065943_010 0.3067031394 - - -
17 Hb_067769_010 0.3081352618 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
18 Hb_000460_070 0.309254678 - - luminal binding protein [Gossypium hirsutum]
19 Hb_006157_050 0.310478386 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_010883_130 0.311498065 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]

Gene co-expression network

sample Hb_002360_020 Hb_002360_020 Hb_012098_190 Hb_012098_190 Hb_002360_020--Hb_012098_190 Hb_050334_010 Hb_050334_010 Hb_002360_020--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002360_020--Hb_001519_210 Hb_000307_230 Hb_000307_230 Hb_002360_020--Hb_000307_230 Hb_032531_010 Hb_032531_010 Hb_002360_020--Hb_032531_010 Hb_054467_010 Hb_054467_010 Hb_002360_020--Hb_054467_010 Hb_076795_010 Hb_076795_010 Hb_012098_190--Hb_076795_010 Hb_001188_120 Hb_001188_120 Hb_012098_190--Hb_001188_120 Hb_000144_040 Hb_000144_040 Hb_012098_190--Hb_000144_040 Hb_181026_010 Hb_181026_010 Hb_012098_190--Hb_181026_010 Hb_000031_350 Hb_000031_350 Hb_012098_190--Hb_000031_350 Hb_050334_010--Hb_032531_010 Hb_050334_010--Hb_001519_210 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_002869_070 Hb_002869_070 Hb_050334_010--Hb_002869_070 Hb_065943_010 Hb_065943_010 Hb_050334_010--Hb_065943_010 Hb_043792_020 Hb_043792_020 Hb_001519_210--Hb_043792_020 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_001519_210--Hb_002869_070 Hb_002599_040 Hb_002599_040 Hb_000307_230--Hb_002599_040 Hb_000764_040 Hb_000764_040 Hb_000307_230--Hb_000764_040 Hb_106815_010 Hb_106815_010 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_010883_130 Hb_010883_130 Hb_000307_230--Hb_010883_130 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010 Hb_032531_010--Hb_000940_190 Hb_032531_010--Hb_099723_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050 Hb_032531_010--Hb_012295_020 Hb_007199_010 Hb_007199_010 Hb_054467_010--Hb_007199_010 Hb_000460_070 Hb_000460_070 Hb_054467_010--Hb_000460_070 Hb_010422_070 Hb_010422_070 Hb_054467_010--Hb_010422_070 Hb_005167_020 Hb_005167_020 Hb_054467_010--Hb_005167_020 Hb_156182_010 Hb_156182_010 Hb_054467_010--Hb_156182_010 Hb_007181_020 Hb_007181_020 Hb_054467_010--Hb_007181_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0254954 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1166 0.0458477 0.33489 0.203408 0.55792

CAGE analysis