Hb_002367_030

Information

Type -
Description -
Location Contig2367: 26235-26504
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30725g
description hypothetical protein
nr
ID XP_006369748.1
description hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GX12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30725g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24760: 26356-26636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002367_030 0.0 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
2 Hb_017400_010 0.0770597531 - - unnamed protein product [Vitis vinifera]
3 Hb_003540_180 0.0994155113 - - -
4 Hb_019818_010 0.1111748214 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
5 Hb_001102_310 0.142426502 - - Protein AFR, putative [Ricinus communis]
6 Hb_012092_070 0.1465345036 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
7 Hb_091537_010 0.1846397098 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_033153_080 0.1925063266 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
9 Hb_001085_140 0.2016925298 - - conserved hypothetical protein [Ricinus communis]
10 Hb_094529_020 0.2167708991 - - leucine-rich repeat containing protein, putative [Ricinus communis]
11 Hb_132840_120 0.2225810861 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
12 Hb_001184_140 0.2316383335 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
13 Hb_004947_010 0.2413614669 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_001153_070 0.2534875688 - - -
15 Hb_002686_100 0.2585437255 - - -
16 Hb_029508_020 0.2604476023 - - -
17 Hb_052640_010 0.2627774421 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
18 Hb_005097_010 0.2666579033 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
19 Hb_000541_030 0.2679250486 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000160_050 0.2783316382 - - hypothetical protein JCGZ_02516 [Jatropha curcas]

Gene co-expression network

sample Hb_002367_030 Hb_002367_030 Hb_017400_010 Hb_017400_010 Hb_002367_030--Hb_017400_010 Hb_003540_180 Hb_003540_180 Hb_002367_030--Hb_003540_180 Hb_019818_010 Hb_019818_010 Hb_002367_030--Hb_019818_010 Hb_001102_310 Hb_001102_310 Hb_002367_030--Hb_001102_310 Hb_012092_070 Hb_012092_070 Hb_002367_030--Hb_012092_070 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010 Hb_017400_010--Hb_019818_010 Hb_017400_010--Hb_012092_070 Hb_132840_120 Hb_132840_120 Hb_017400_010--Hb_132840_120 Hb_017400_010--Hb_003540_180 Hb_017400_010--Hb_001102_310 Hb_003540_180--Hb_001102_310 Hb_003540_180--Hb_091537_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_019818_010--Hb_012092_070 Hb_019818_010--Hb_132840_120 Hb_001184_140 Hb_001184_140 Hb_019818_010--Hb_001184_140 Hb_004728_030 Hb_004728_030 Hb_019818_010--Hb_004728_030 Hb_001102_310--Hb_091537_010 Hb_029508_020 Hb_029508_020 Hb_001102_310--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001102_310--Hb_000541_030 Hb_012092_070--Hb_132840_120 Hb_012092_070--Hb_004728_030 Hb_012092_070--Hb_001184_140 Hb_091537_010--Hb_029508_020 Hb_091537_010--Hb_000541_030 Hb_000347_210 Hb_000347_210 Hb_091537_010--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_091537_010--Hb_119808_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 4.4901 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.17762 0 0 0

CAGE analysis