Hb_002367_130

Information

Type -
Description -
Location Contig2367: 137750-145939
Sequence    

Annotation

kegg
ID tcc:TCM_007139
description UNC-50 family protein isoform 1
nr
ID XP_007042528.1
description UNC-50 family protein isoform 1 [Theobroma cacao]
swissprot
ID Q54DD7
description Protein unc-50 homolog OS=Dictyostelium discoideum GN=DDB_G0292320 PE=3 SV=1
trembl
ID A0A061E000
description UNC-50 family protein isoform 1 OS=Theobroma cacao GN=TCM_007139 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24763: 137954-143083 , PASA_asmbl_24764: 130636-139515 , PASA_asmbl_24765: 130629-139195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002367_130 0.0 - - UNC-50 family protein isoform 1 [Theobroma cacao]
2 Hb_000116_180 0.0728699556 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
3 Hb_001828_160 0.0733264532 - - hypothetical protein F775_31105 [Aegilops tauschii]
4 Hb_000207_310 0.0755665973 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
5 Hb_003018_130 0.0779326098 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
6 Hb_021422_010 0.0815468793 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
7 Hb_001369_420 0.0833283528 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
8 Hb_000003_290 0.0843461616 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
9 Hb_006620_020 0.0855873023 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
10 Hb_003018_060 0.0877980843 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
11 Hb_000946_120 0.088160761 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000032_490 0.0884583717 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
13 Hb_001136_100 0.0887825962 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
14 Hb_001541_260 0.0895950337 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
15 Hb_002154_120 0.0897711681 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
16 Hb_054865_100 0.0898593936 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
17 Hb_004837_190 0.090296766 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
18 Hb_000913_050 0.0906957898 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
19 Hb_003849_250 0.0911814808 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
20 Hb_001493_030 0.0924779307 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]

Gene co-expression network

sample Hb_002367_130 Hb_002367_130 Hb_000116_180 Hb_000116_180 Hb_002367_130--Hb_000116_180 Hb_001828_160 Hb_001828_160 Hb_002367_130--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_002367_130--Hb_000207_310 Hb_003018_130 Hb_003018_130 Hb_002367_130--Hb_003018_130 Hb_021422_010 Hb_021422_010 Hb_002367_130--Hb_021422_010 Hb_001369_420 Hb_001369_420 Hb_002367_130--Hb_001369_420 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_001828_160--Hb_000207_310 Hb_001828_160--Hb_000913_050 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_002823_030 Hb_002823_030 Hb_003018_130--Hb_002823_030 Hb_002749_110 Hb_002749_110 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_000574_440 Hb_000574_440 Hb_003018_130--Hb_000574_440 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_000051_070 Hb_000051_070 Hb_001369_420--Hb_000051_070 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7078 1.43731 1.50501 1.26971 4.5412 2.56125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45016 2.24676 1.6659 1.60828 1.56769

CAGE analysis