Hb_002368_080

Information

Type -
Description -
Location Contig2368: 130142-131311
Sequence    

Annotation

kegg
ID vvi:100241403
description uncharacterized LOC100241403
nr
ID XP_012089716.1
description PREDICTED: transcription factor SCREAM2-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LXA9
description Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1
trembl
ID A0A067JS26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00382 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor scream2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24773: 130136-130577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_080 0.0 - - PREDICTED: transcription factor SCREAM2-like isoform X2 [Jatropha curcas]
2 Hb_000670_080 0.1614729227 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000098_210 0.1989687396 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
4 Hb_000032_330 0.2038007464 - - conserved hypothetical protein [Ricinus communis]
5 Hb_128582_010 0.2071378481 - - -
6 Hb_006326_020 0.2086699614 - - -
7 Hb_001522_050 0.2139718307 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
8 Hb_004875_040 0.2160253415 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
9 Hb_095532_010 0.2225398117 - - BnaC05g27570D [Brassica napus]
10 Hb_131029_010 0.2229204931 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_041063_010 0.2235837919 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_000046_250 0.2301632612 - - conserved hypothetical protein [Ricinus communis]
13 Hb_148817_010 0.2394448714 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
14 Hb_020805_110 0.241014643 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
15 Hb_000836_250 0.2430313996 - - hypothetical protein VITISV_022299 [Vitis vinifera]
16 Hb_002413_030 0.2453650449 - - sulfate transporter, putative [Ricinus communis]
17 Hb_007007_020 0.245624562 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000563_620 0.2474651382 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
19 Hb_004241_050 0.2487243428 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
20 Hb_022181_010 0.2507463071 - - PREDICTED: peroxidase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_002368_080 Hb_002368_080 Hb_000670_080 Hb_000670_080 Hb_002368_080--Hb_000670_080 Hb_000098_210 Hb_000098_210 Hb_002368_080--Hb_000098_210 Hb_000032_330 Hb_000032_330 Hb_002368_080--Hb_000032_330 Hb_128582_010 Hb_128582_010 Hb_002368_080--Hb_128582_010 Hb_006326_020 Hb_006326_020 Hb_002368_080--Hb_006326_020 Hb_001522_050 Hb_001522_050 Hb_002368_080--Hb_001522_050 Hb_131029_010 Hb_131029_010 Hb_000670_080--Hb_131029_010 Hb_095532_010 Hb_095532_010 Hb_000670_080--Hb_095532_010 Hb_000670_080--Hb_001522_050 Hb_000670_080--Hb_006326_020 Hb_000670_080--Hb_000032_330 Hb_004875_040 Hb_004875_040 Hb_000670_080--Hb_004875_040 Hb_000098_210--Hb_000032_330 Hb_000098_210--Hb_004875_040 Hb_041063_010 Hb_041063_010 Hb_000098_210--Hb_041063_010 Hb_148817_010 Hb_148817_010 Hb_000098_210--Hb_148817_010 Hb_003171_070 Hb_003171_070 Hb_000098_210--Hb_003171_070 Hb_003371_040 Hb_003371_040 Hb_000098_210--Hb_003371_040 Hb_000032_330--Hb_041063_010 Hb_000032_330--Hb_148817_010 Hb_000032_330--Hb_095532_010 Hb_000032_330--Hb_004875_040 Hb_020805_110 Hb_020805_110 Hb_000032_330--Hb_020805_110 Hb_001821_030 Hb_001821_030 Hb_128582_010--Hb_001821_030 Hb_001115_010 Hb_001115_010 Hb_128582_010--Hb_001115_010 Hb_128582_010--Hb_004875_040 Hb_128582_010--Hb_000098_210 Hb_001369_530 Hb_001369_530 Hb_128582_010--Hb_001369_530 Hb_000059_110 Hb_000059_110 Hb_128582_010--Hb_000059_110 Hb_007007_020 Hb_007007_020 Hb_006326_020--Hb_007007_020 Hb_001975_170 Hb_001975_170 Hb_006326_020--Hb_001975_170 Hb_007017_130 Hb_007017_130 Hb_006326_020--Hb_007017_130 Hb_004634_010 Hb_004634_010 Hb_006326_020--Hb_004634_010 Hb_099777_010 Hb_099777_010 Hb_006326_020--Hb_099777_010 Hb_000967_070 Hb_000967_070 Hb_006326_020--Hb_000967_070 Hb_003469_030 Hb_003469_030 Hb_001522_050--Hb_003469_030 Hb_001522_050--Hb_020805_110 Hb_003090_230 Hb_003090_230 Hb_001522_050--Hb_003090_230 Hb_022181_010 Hb_022181_010 Hb_001522_050--Hb_022181_010 Hb_000676_380 Hb_000676_380 Hb_001522_050--Hb_000676_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378112 0.468717 0 5.1922 0.321225 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.99318 0

CAGE analysis