Hb_002370_020

Information

Type -
Description -
Location Contig2370: 38963-39271
Sequence    

Annotation

kegg
ID pop:POPTR_0125s00200g
description hypothetical protein
nr
ID KDP27272.1
description hypothetical protein JCGZ_19971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24802: 38817-39334
cDNA
(Sanger)
(ID:Location)		 033_A05.ab1: 38817-39334

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002370_020 0.0 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
2 Hb_000866_400 0.0623203785 - - -
3 Hb_149507_010 0.0660139131 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
4 Hb_025623_010 0.0769284844 - - -
5 Hb_003371_280 0.0975625383 - - unnamed protein product [Vitis vinifera]
6 Hb_001269_660 0.1089255196 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
7 Hb_002374_510 0.1163758621 - - Esterase precursor, putative [Ricinus communis]
8 Hb_000620_050 0.1204902262 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
9 Hb_011501_020 0.1235703125 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
10 Hb_146036_010 0.1253367936 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
11 Hb_031579_010 0.1277946934 - - JHL22C18.10 [Jatropha curcas]
12 Hb_003968_030 0.1288521368 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_012395_060 0.1297732508 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
14 Hb_022973_010 0.1326341912 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
15 Hb_011709_010 0.1347781385 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
16 Hb_121624_010 0.1360860775 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
17 Hb_001277_010 0.1365658866 - - unknown [Populus trichocarpa]
18 Hb_000034_060 0.1369741076 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
19 Hb_001143_210 0.1397642238 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
20 Hb_000300_650 0.1416455082 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_002370_020 Hb_002370_020 Hb_000866_400 Hb_000866_400 Hb_002370_020--Hb_000866_400 Hb_149507_010 Hb_149507_010 Hb_002370_020--Hb_149507_010 Hb_025623_010 Hb_025623_010 Hb_002370_020--Hb_025623_010 Hb_003371_280 Hb_003371_280 Hb_002370_020--Hb_003371_280 Hb_001269_660 Hb_001269_660 Hb_002370_020--Hb_001269_660 Hb_002374_510 Hb_002374_510 Hb_002370_020--Hb_002374_510 Hb_000866_400--Hb_025623_010 Hb_011501_020 Hb_011501_020 Hb_000866_400--Hb_011501_020 Hb_000620_050 Hb_000620_050 Hb_000866_400--Hb_000620_050 Hb_031579_010 Hb_031579_010 Hb_000866_400--Hb_031579_010 Hb_000866_400--Hb_149507_010 Hb_149507_010--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_149507_010--Hb_012395_060 Hb_001277_010 Hb_001277_010 Hb_149507_010--Hb_001277_010 Hb_149507_010--Hb_025623_010 Hb_025623_010--Hb_011501_020 Hb_121624_010 Hb_121624_010 Hb_025623_010--Hb_121624_010 Hb_025623_010--Hb_001269_660 Hb_003371_280--Hb_000620_050 Hb_184074_010 Hb_184074_010 Hb_003371_280--Hb_184074_010 Hb_003371_280--Hb_002374_510 Hb_003371_280--Hb_000866_400 Hb_011519_040 Hb_011519_040 Hb_003371_280--Hb_011519_040 Hb_001269_660--Hb_012395_060 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_001269_660--Hb_121624_010 Hb_001269_660--Hb_001277_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_009122_010 Hb_009122_010 Hb_002374_510--Hb_009122_010 Hb_113766_010 Hb_113766_010 Hb_002374_510--Hb_113766_010 Hb_002374_510--Hb_001269_660 Hb_002374_510--Hb_012395_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.330847 18.5157 116.576 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 26.046 82.5408

CAGE analysis