Hb_002370_040

Information

Type -
Description -
Location Contig2370: 49510-49743
Sequence    

Annotation

kegg
ID mtr:MTR_2g087380
description hypothetical protein
nr
ID XP_012085065.1
description PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RFV9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24804: 50728-51143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002370_040 0.0 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
2 Hb_007481_030 0.1260500772 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
3 Hb_012395_080 0.145607366 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
4 Hb_003895_030 0.1490671601 - - -
5 Hb_000136_190 0.1538070952 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
6 Hb_007223_010 0.160948293 - - conserved hypothetical protein [Ricinus communis]
7 Hb_100525_010 0.171811554 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
8 Hb_144550_020 0.1885901259 - - -
9 Hb_143960_010 0.191376704 - - -
10 Hb_002742_080 0.1917536739 - - unknown [Populus trichocarpa]
11 Hb_002320_070 0.196918291 - - conserved hypothetical protein [Ricinus communis]
12 Hb_118720_010 0.1972083644 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
13 Hb_003814_030 0.1975108488 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
14 Hb_002066_080 0.199774408 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
15 Hb_001508_020 0.2005840967 - - myosin vIII, putative [Ricinus communis]
16 Hb_000021_020 0.2020772114 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
17 Hb_000077_220 0.2025312877 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
18 Hb_003157_030 0.2037133798 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
19 Hb_005144_030 0.2049047412 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
20 Hb_000330_160 0.2049500859 - - hypothetical protein JCGZ_04462 [Jatropha curcas]

Gene co-expression network

sample Hb_002370_040 Hb_002370_040 Hb_007481_030 Hb_007481_030 Hb_002370_040--Hb_007481_030 Hb_012395_080 Hb_012395_080 Hb_002370_040--Hb_012395_080 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_000136_190 Hb_000136_190 Hb_002370_040--Hb_000136_190 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_143960_010 Hb_143960_010 Hb_007481_030--Hb_143960_010 Hb_007481_030--Hb_007223_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_000120_520 Hb_000120_520 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_144550_020 Hb_144550_020 Hb_012395_080--Hb_144550_020 Hb_012395_080--Hb_007481_030 Hb_008616_030 Hb_008616_030 Hb_012395_080--Hb_008616_030 Hb_012395_080--Hb_000136_190 Hb_045870_010 Hb_045870_010 Hb_012395_080--Hb_045870_010 Hb_003895_030--Hb_100525_010 Hb_003895_030--Hb_007481_030 Hb_002742_080 Hb_002742_080 Hb_003895_030--Hb_002742_080 Hb_004935_080 Hb_004935_080 Hb_003895_030--Hb_004935_080 Hb_002320_070 Hb_002320_070 Hb_003895_030--Hb_002320_070 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_000330_160 Hb_000330_160 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_000201_040 Hb_000201_040 Hb_007223_010--Hb_000201_040 Hb_000181_360 Hb_000181_360 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_097646_010 Hb_097646_010 Hb_100525_010--Hb_097646_010 Hb_000571_150 Hb_000571_150 Hb_100525_010--Hb_000571_150 Hb_100525_010--Hb_002742_080 Hb_003376_260 Hb_003376_260 Hb_100525_010--Hb_003376_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6565 28.6784 16.4055 14.9966 27.1347 41.7514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.62213 4.52822 8.48846 4.80929

CAGE analysis