Hb_002374_030

Information

Type -
Description -
Location Contig2374: 20716-22599
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20420g
description POPTRDRAFT_1078580; hypothetical protein
nr
ID XP_012078262.1
description PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
swissprot
ID O04086
description Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1
trembl
ID B9H7I7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s20420g PE=3 SV=2
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g11050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_030 0.0 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
2 Hb_001160_050 0.0739294949 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
3 Hb_189208_060 0.0780671807 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
4 Hb_008406_070 0.0791330971 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
5 Hb_000071_090 0.0907203651 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
6 Hb_000032_090 0.0920961576 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000836_420 0.0936867431 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_000319_010 0.0939292143 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
9 Hb_000878_090 0.0941000092 - - sucrose-phosphatase family protein [Populus trichocarpa]
10 Hb_011915_020 0.0966335752 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
11 Hb_011794_050 0.1077447138 - - transcription factor, putative [Ricinus communis]
12 Hb_001254_020 0.1119435685 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
13 Hb_003078_070 0.1166570112 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
14 Hb_000152_410 0.1177377487 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
15 Hb_028486_010 0.1182439309 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
16 Hb_009907_020 0.1197326309 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
17 Hb_003060_150 0.1200316906 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_000418_060 0.1204783285 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
19 Hb_138086_010 0.1205059704 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_000985_140 0.1216393012 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_030 Hb_002374_030 Hb_001160_050 Hb_001160_050 Hb_002374_030--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_002374_030--Hb_189208_060 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_000836_420 Hb_000836_420 Hb_002374_030--Hb_000836_420 Hb_001160_050--Hb_000836_420 Hb_000878_090 Hb_000878_090 Hb_001160_050--Hb_000878_090 Hb_001160_050--Hb_189208_060 Hb_009907_020 Hb_009907_020 Hb_001160_050--Hb_009907_020 Hb_000152_410 Hb_000152_410 Hb_001160_050--Hb_000152_410 Hb_189208_060--Hb_000836_420 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_001660_080 Hb_001660_080 Hb_189208_060--Hb_001660_080 Hb_189208_060--Hb_000152_410 Hb_008406_070--Hb_000071_090 Hb_138086_010 Hb_138086_010 Hb_008406_070--Hb_138086_010 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_008406_070--Hb_001160_050 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_001769_120 Hb_001769_120 Hb_000071_090--Hb_001769_120 Hb_000071_090--Hb_189208_060 Hb_000985_140 Hb_000985_140 Hb_000071_090--Hb_000985_140 Hb_004393_030 Hb_004393_030 Hb_000032_090--Hb_004393_030 Hb_001254_020 Hb_001254_020 Hb_000032_090--Hb_001254_020 Hb_008810_030 Hb_008810_030 Hb_000032_090--Hb_008810_030 Hb_000032_090--Hb_000985_140 Hb_012799_040 Hb_012799_040 Hb_000032_090--Hb_012799_040 Hb_000836_420--Hb_001660_080 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_000836_420--Hb_003078_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.83757 7.7511 4.71318 0.0106245 0.0205542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0482405 0 0.0359284 0.627047 1.84159

CAGE analysis