Hb_002374_050

Information

Type -
Description -
Location Contig2374: 35222-41749
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07940g
description POPTRDRAFT_816257; hypothetical protein
nr
ID XP_012078265.1
description PREDICTED: auxilin-related protein 1 [Jatropha curcas]
swissprot
ID Q0WQ57
description Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1
trembl
ID A0A067KCU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24839: 35032-35293 , PASA_asmbl_24840: 35296-41637 , PASA_asmbl_24841: 38523-38714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_050 0.0 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
2 Hb_006114_030 0.0719764689 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
3 Hb_002054_040 0.0772498068 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
4 Hb_000260_220 0.0774684676 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_004689_050 0.0788792123 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001124_160 0.0793108349 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_100215_010 0.0832658312 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
8 Hb_000046_440 0.0901633301 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
9 Hb_007741_020 0.0907732454 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
10 Hb_002784_060 0.0912373655 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
11 Hb_033834_060 0.0916221733 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
12 Hb_000031_220 0.0924997868 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
13 Hb_000212_240 0.0970539222 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_000023_190 0.0975695583 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
15 Hb_016657_010 0.0980230938 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
16 Hb_106724_020 0.1004722005 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
17 Hb_000567_050 0.1006386554 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
18 Hb_004055_030 0.1030826336 - - casein kinase, putative [Ricinus communis]
19 Hb_000166_110 0.1032896037 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
20 Hb_012325_030 0.1033111794 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002374_050 Hb_002374_050 Hb_006114_030 Hb_006114_030 Hb_002374_050--Hb_006114_030 Hb_002054_040 Hb_002054_040 Hb_002374_050--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_002374_050--Hb_000260_220 Hb_004689_050 Hb_004689_050 Hb_002374_050--Hb_004689_050 Hb_001124_160 Hb_001124_160 Hb_002374_050--Hb_001124_160 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_006114_030--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_006114_030--Hb_033834_060 Hb_003673_060 Hb_003673_060 Hb_006114_030--Hb_003673_060 Hb_000046_440 Hb_000046_440 Hb_006114_030--Hb_000046_440 Hb_002784_060 Hb_002784_060 Hb_006114_030--Hb_002784_060 Hb_000166_110 Hb_000166_110 Hb_002054_040--Hb_000166_110 Hb_000031_220 Hb_000031_220 Hb_002054_040--Hb_000031_220 Hb_002054_040--Hb_000260_220 Hb_000134_090 Hb_000134_090 Hb_002054_040--Hb_000134_090 Hb_002982_040 Hb_002982_040 Hb_002054_040--Hb_002982_040 Hb_000260_220--Hb_000031_220 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_004689_050--Hb_100215_010 Hb_000020_190 Hb_000020_190 Hb_001124_160--Hb_000020_190 Hb_004055_030 Hb_004055_030 Hb_001124_160--Hb_004055_030 Hb_062135_030 Hb_062135_030 Hb_001124_160--Hb_062135_030 Hb_001124_160--Hb_000166_110 Hb_004310_130 Hb_004310_130 Hb_001124_160--Hb_004310_130 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0616 19.4302 15.4892 24.9947 33.5631 55.4967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.0546 12.2514 23.3579 30.8201 19.2032

CAGE analysis