Hb_002374_100

Information

Type -
Description -
Location Contig2374: 90965-98531
Sequence    

Annotation

kegg
ID rcu:RCOM_0562940
description replication factor C / DNA polymerase III gamma-tau subunit, putative (EC:2.7.7.7)
nr
ID XP_002520330.1
description replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
swissprot
ID Q93ZX1
description Replication factor C subunit 4 OS=Arabidopsis thaliana GN=RFC4 PE=2 SV=1
trembl
ID B9S2W1
description Replication factor C / DNA polymerase III gamma-tau subunit, putative OS=Ricinus communis GN=RCOM_0562940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24850: 90986-98309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_100 0.0 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
2 Hb_000976_430 0.0737256217 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
3 Hb_010422_060 0.0829762965 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
4 Hb_001014_040 0.0857813143 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
5 Hb_022181_020 0.0869216813 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
6 Hb_005183_120 0.0915381554 - - protein translocase, putative [Ricinus communis]
7 Hb_000010_460 0.0928647474 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
8 Hb_002830_030 0.0949993639 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
9 Hb_001726_020 0.0957390456 - - PREDICTED: endophilin-A1 [Jatropha curcas]
10 Hb_000504_140 0.0980801384 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
11 Hb_001818_090 0.0989773319 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000059_360 0.0993973185 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
13 Hb_005539_280 0.1027232648 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
14 Hb_006615_020 0.1067304275 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_034482_020 0.1081836878 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_000445_420 0.1095113498 - - protein transporter, putative [Ricinus communis]
17 Hb_000334_150 0.110340795 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003207_190 0.1111819803 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
19 Hb_001507_040 0.1112325272 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000028_590 0.1118182806 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_002374_100 Hb_002374_100 Hb_000976_430 Hb_000976_430 Hb_002374_100--Hb_000976_430 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_001014_040 Hb_001014_040 Hb_002374_100--Hb_001014_040 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_005183_120 Hb_005183_120 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_000504_140 Hb_000504_140 Hb_000976_430--Hb_000504_140 Hb_002499_040 Hb_002499_040 Hb_000976_430--Hb_002499_040 Hb_001818_090 Hb_001818_090 Hb_000976_430--Hb_001818_090 Hb_005539_280 Hb_005539_280 Hb_000976_430--Hb_005539_280 Hb_001221_210 Hb_001221_210 Hb_000976_430--Hb_001221_210 Hb_002830_030 Hb_002830_030 Hb_010422_060--Hb_002830_030 Hb_001059_030 Hb_001059_030 Hb_010422_060--Hb_001059_030 Hb_010422_060--Hb_000504_140 Hb_000062_220 Hb_000062_220 Hb_010422_060--Hb_000062_220 Hb_005779_060 Hb_005779_060 Hb_010422_060--Hb_005779_060 Hb_004254_120 Hb_004254_120 Hb_010422_060--Hb_004254_120 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_001811_030 Hb_001811_030 Hb_001014_040--Hb_001811_030 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_035273_030 Hb_035273_030 Hb_022181_020--Hb_035273_030 Hb_000069_600 Hb_000069_600 Hb_022181_020--Hb_000069_600 Hb_000445_420 Hb_000445_420 Hb_022181_020--Hb_000445_420 Hb_000111_360 Hb_000111_360 Hb_022181_020--Hb_000111_360 Hb_002769_050 Hb_002769_050 Hb_022181_020--Hb_002769_050 Hb_000676_150 Hb_000676_150 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_000165_160 Hb_000165_160 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_002061_040 Hb_002061_040 Hb_000010_460--Hb_002061_040 Hb_010080_090 Hb_010080_090 Hb_000010_460--Hb_010080_090 Hb_172426_040 Hb_172426_040 Hb_000010_460--Hb_172426_040 Hb_000020_060 Hb_000020_060 Hb_000010_460--Hb_000020_060 Hb_001832_010 Hb_001832_010 Hb_000010_460--Hb_001832_010 Hb_000028_590 Hb_000028_590 Hb_000010_460--Hb_000028_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1393 8.03072 13.0702 7.16783 11.855 15.2417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.687 17.4591 30.5134 18.4938 7.88088

CAGE analysis