Hb_002374_110

Information

Type -
Description -
Location Contig2374: 99201-99782
Sequence    

Annotation

kegg
ID rcu:RCOM_0562950
description hypothetical protein
nr
ID XP_012078275.1
description PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12119 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24850: 90986-98309
cDNA
(Sanger)
(ID:Location)		 009_H03.ab1: 99175-99931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_110 0.0 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
2 Hb_127743_030 0.0703096018 - - amino acid transporter, putative [Ricinus communis]
3 Hb_003166_040 0.0756796689 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
4 Hb_006919_010 0.0892417249 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
5 Hb_058526_010 0.0952368685 - - -
6 Hb_007483_030 0.1005585406 - - -
7 Hb_027288_010 0.1059285772 - - mutt domain protein, putative [Ricinus communis]
8 Hb_007432_050 0.1096533625 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
9 Hb_002272_160 0.1105457578 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_000407_110 0.1125113534 - - ripening-induced ACC oxidase [Carica papaya]
11 Hb_013652_010 0.113858998 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_000462_020 0.1147279556 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_002376_030 0.1168934577 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_003581_240 0.1198477692 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_001609_080 0.1203304458 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
16 Hb_002843_010 0.1283759808 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
17 Hb_007747_030 0.1296279026 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
18 Hb_005653_100 0.1352435312 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
19 Hb_000288_140 0.1381091053 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
20 Hb_000220_170 0.1449439076 - - -

Gene co-expression network

sample Hb_002374_110 Hb_002374_110 Hb_127743_030 Hb_127743_030 Hb_002374_110--Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_002374_110--Hb_003166_040 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_058526_010 Hb_058526_010 Hb_002374_110--Hb_058526_010 Hb_007483_030 Hb_007483_030 Hb_002374_110--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_002374_110--Hb_027288_010 Hb_127743_030--Hb_003166_040 Hb_127743_030--Hb_058526_010 Hb_007432_050 Hb_007432_050 Hb_127743_030--Hb_007432_050 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030 Hb_003166_040--Hb_058526_010 Hb_003166_040--Hb_027288_010 Hb_003166_040--Hb_007483_030 Hb_003166_040--Hb_007432_050 Hb_000407_110 Hb_000407_110 Hb_006919_010--Hb_000407_110 Hb_001609_080 Hb_001609_080 Hb_006919_010--Hb_001609_080 Hb_002376_030 Hb_002376_030 Hb_006919_010--Hb_002376_030 Hb_006919_010--Hb_007483_030 Hb_006919_010--Hb_003166_040 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_058526_010--Hb_007483_030 Hb_007483_030--Hb_027288_010 Hb_007483_030--Hb_007747_030 Hb_003052_070 Hb_003052_070 Hb_007483_030--Hb_003052_070 Hb_007483_030--Hb_000407_110 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_027288_010--Hb_003052_070 Hb_027288_010--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_027288_010--Hb_000567_310 Hb_027288_010--Hb_002272_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.681989 39.4069 22.4404 11.1888 0.0427169 0.1914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0830597 0 122.583 0

CAGE analysis