Hb_002374_130

Information

Type -
Description -
Location Contig2374: 107187-110683
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08090g
description hypothetical protein
nr
ID XP_011003423.1
description PREDICTED: metal transporter Nramp5-like [Populus euphratica]
swissprot
ID Q8H4H5
description Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1
trembl
ID U5GSE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08090g PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_130 0.0 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
2 Hb_002870_050 0.1300006675 - - -
3 Hb_028487_090 0.1482198631 - - -
4 Hb_175748_010 0.1498640585 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000676_210 0.2837001721 - - Cytochrome P450 superfamily protein [Theobroma cacao]
6 Hb_003207_140 0.2837006161 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
7 Hb_004730_030 0.2837119125 - - synaptonemal complex protein, putative [Ricinus communis]
8 Hb_002431_070 0.2837143671 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
9 Hb_085438_010 0.2837152709 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_004337_010 0.2837198216 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002223_010 0.2837199895 - - hypothetical protein VITISV_009489 [Vitis vinifera]
12 Hb_029793_020 0.2837249532 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_029154_020 0.2837265422 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_108331_010 0.2838079386 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_163434_010 0.2838861054 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
16 Hb_130470_010 0.2843420151 - - hypothetical protein, partial [Pseudomonas tolaasii]
17 Hb_003226_270 0.2843711883 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
18 Hb_006995_030 0.2868532352 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
19 Hb_000148_010 0.2912240098 - - -
20 Hb_000018_050 0.2914106502 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002374_130 Hb_002374_130 Hb_002870_050 Hb_002870_050 Hb_002374_130--Hb_002870_050 Hb_028487_090 Hb_028487_090 Hb_002374_130--Hb_028487_090 Hb_175748_010 Hb_175748_010 Hb_002374_130--Hb_175748_010 Hb_000676_210 Hb_000676_210 Hb_002374_130--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_002374_130--Hb_003207_140 Hb_004730_030 Hb_004730_030 Hb_002374_130--Hb_004730_030 Hb_002870_050--Hb_175748_010 Hb_002870_050--Hb_028487_090 Hb_042795_010 Hb_042795_010 Hb_002870_050--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_002870_050--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_002870_050--Hb_003401_040 Hb_097969_010 Hb_097969_010 Hb_028487_090--Hb_097969_010 Hb_028487_090--Hb_175748_010 Hb_003938_040 Hb_003938_040 Hb_028487_090--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_028487_090--Hb_007108_060 Hb_007924_040 Hb_007924_040 Hb_175748_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_175748_010--Hb_003683_100 Hb_000474_020 Hb_000474_020 Hb_175748_010--Hb_000474_020 Hb_001072_060 Hb_001072_060 Hb_175748_010--Hb_001072_060 Hb_000676_210--Hb_003207_140 Hb_000676_210--Hb_004730_030 Hb_004337_010 Hb_004337_010 Hb_000676_210--Hb_004337_010 Hb_002223_010 Hb_002223_010 Hb_000676_210--Hb_002223_010 Hb_002431_070 Hb_002431_070 Hb_000676_210--Hb_002431_070 Hb_085438_010 Hb_085438_010 Hb_000676_210--Hb_085438_010 Hb_003207_140--Hb_004337_010 Hb_003207_140--Hb_002223_010 Hb_029793_020 Hb_029793_020 Hb_003207_140--Hb_029793_020 Hb_003207_140--Hb_004730_030 Hb_029154_020 Hb_029154_020 Hb_003207_140--Hb_029154_020 Hb_004730_030--Hb_002431_070 Hb_004730_030--Hb_085438_010 Hb_108331_010 Hb_108331_010 Hb_004730_030--Hb_108331_010 Hb_004730_030--Hb_004337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0128882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.023232 0 0 0.048699

CAGE analysis