Hb_002374_150

Information

Type -
Description -
Location Contig2374: 111911-119251
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08110g
description hypothetical protein
nr
ID XP_012078280.1
description PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
swissprot
ID Q9XI07
description SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1
trembl
ID A0A067KCV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12125 PE=4 SV=1
Gene Ontology
ID GO:0016514
description swi snf complex subunit swi3c-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24854: 111995-119208 , PASA_asmbl_24855: 111995-119199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_150 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
2 Hb_000212_280 0.0709900015 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
3 Hb_000608_340 0.0749660809 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
4 Hb_001486_120 0.0826015535 - - PREDICTED: importin-5-like [Jatropha curcas]
5 Hb_012760_200 0.0843077647 - - protein phsophatase-2a, putative [Ricinus communis]
6 Hb_000573_040 0.0885840161 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
7 Hb_001582_030 0.0896291963 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
8 Hb_000890_220 0.089904943 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
9 Hb_000318_140 0.0911102679 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
10 Hb_101151_020 0.0911921643 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000134_360 0.091519767 - - PREDICTED: protein gar2 [Jatropha curcas]
12 Hb_002918_070 0.0925495853 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
13 Hb_000779_040 0.093607279 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
14 Hb_013753_010 0.0943715807 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
15 Hb_004032_350 0.0958196626 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
16 Hb_002725_070 0.0962577281 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
17 Hb_006002_030 0.0972855958 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
18 Hb_000331_480 0.0973114506 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
19 Hb_001278_060 0.0975185898 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_000003_790 0.0985179122 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002374_150 Hb_002374_150 Hb_000212_280 Hb_000212_280 Hb_002374_150--Hb_000212_280 Hb_000608_340 Hb_000608_340 Hb_002374_150--Hb_000608_340 Hb_001486_120 Hb_001486_120 Hb_002374_150--Hb_001486_120 Hb_012760_200 Hb_012760_200 Hb_002374_150--Hb_012760_200 Hb_000573_040 Hb_000573_040 Hb_002374_150--Hb_000573_040 Hb_001582_030 Hb_001582_030 Hb_002374_150--Hb_001582_030 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_000779_040 Hb_000779_040 Hb_000608_340--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000608_340--Hb_019871_020 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_012760_200--Hb_005028_010 Hb_004032_350 Hb_004032_350 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_012760_200--Hb_000212_280 Hb_012760_200--Hb_000331_480 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000573_040--Hb_000134_360 Hb_000573_040--Hb_000212_280 Hb_000573_040--Hb_005028_010 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090 Hb_001582_030--Hb_005000_270 Hb_001582_030--Hb_000212_280 Hb_001582_030--Hb_000134_360 Hb_001582_030--Hb_019871_020 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.265 51.8913 19.6576 9.75084 139.262 152.876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.8246 13.1874 29.7329 31.552 13.5468

CAGE analysis