Hb_002374_160

Information

Type -
Description -
Location Contig2374: 121839-124186
Sequence    

Annotation

kegg
ID rcu:RCOM_0563200
description 8-oxoguanine DNA glycosylase, putative
nr
ID XP_012078283.1
description PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FNY7
description N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1 SV=1
trembl
ID A0A067KM07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12126 PE=4 SV=1
Gene Ontology
ID GO:0003684
description n-glycosylase dna lyase ogg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24857: 121772-124374 , PASA_asmbl_24858: 123719-123884
cDNA
(Sanger)
(ID:Location)		 004_K05.ab1: 121772-122451 , 045_L18.ab1: 121776-122508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_160 0.0 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
2 Hb_004128_190 0.0717782357 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
3 Hb_000245_130 0.0744560249 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
4 Hb_000398_180 0.0795718143 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
5 Hb_001454_140 0.0801539842 - - protein arginine n-methyltransferase, putative [Ricinus communis]
6 Hb_000720_120 0.0807235929 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_002232_170 0.0808833351 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
8 Hb_000156_130 0.0834740332 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
9 Hb_004374_200 0.0839439058 - - putative GMP synthase [Oxybasis rubra]
10 Hb_007101_100 0.0848837113 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
11 Hb_063090_010 0.0857348414 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_001477_130 0.0877408127 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
13 Hb_004440_050 0.0882404439 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_003847_080 0.0882467115 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
15 Hb_000959_260 0.088288675 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_001138_050 0.0885172389 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
17 Hb_019253_020 0.0885898397 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
18 Hb_000205_160 0.0897516345 - - Peroxisome biogenesis protein 12 [Morus notabilis]
19 Hb_028872_140 0.090854874 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
20 Hb_002078_150 0.0911041148 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002374_160 Hb_002374_160 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_001454_140 Hb_001454_140 Hb_002374_160--Hb_001454_140 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_002232_170 Hb_002232_170 Hb_002374_160--Hb_002232_170 Hb_002078_150 Hb_002078_150 Hb_004128_190--Hb_002078_150 Hb_003847_080 Hb_003847_080 Hb_004128_190--Hb_003847_080 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_000245_130--Hb_002078_150 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000613_140 Hb_000613_140 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000032_570 Hb_000032_570 Hb_000720_120--Hb_000032_570 Hb_002232_170--Hb_007101_100 Hb_015941_030 Hb_015941_030 Hb_002232_170--Hb_015941_030 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_002232_170--Hb_000169_010 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.8092 39.5147 14.9648 28.8747 64.1903 110.121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.2222 98.8367 51.1667 37.2192 26.5896

CAGE analysis