Hb_002374_180

Information

Type -
Description -
Location Contig2374: 134100-134735
Sequence    

Annotation

kegg
ID rcu:RCOM_0563340
description ring finger protein, putative
nr
ID XP_012078366.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
swissprot
ID Q9LT17
description E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1
trembl
ID A0A067K9Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12129 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin ligase big brother-related-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24860: 134202-134469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_180 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
2 Hb_002600_170 0.0438752692 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006831_090 0.0500522638 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
4 Hb_000329_780 0.0528193211 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
5 Hb_006075_030 0.0628279568 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
6 Hb_005532_030 0.0663123721 - - DNA binding protein, putative [Ricinus communis]
7 Hb_008536_020 0.0703765944 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
8 Hb_004032_280 0.0749159434 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
9 Hb_147028_010 0.076901975 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
10 Hb_000031_180 0.0776768283 - - sarcosine oxidase, putative [Ricinus communis]
11 Hb_086300_010 0.0816548377 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_002119_100 0.0875377578 - - cytochrome B561, putative [Ricinus communis]
13 Hb_027472_060 0.0900230175 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
14 Hb_000500_240 0.09094646 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000520_040 0.0926785514 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_003163_010 0.0934679621 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
17 Hb_000904_120 0.0943741103 - - conserved hypothetical protein [Ricinus communis]
18 Hb_015561_010 0.0957448465 - - conserved hypothetical protein [Ricinus communis]
19 Hb_172426_070 0.0971676228 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
20 Hb_166718_010 0.097298587 - - heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_180 Hb_002374_180 Hb_002600_170 Hb_002600_170 Hb_002374_180--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_002374_180--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_002374_180--Hb_000329_780 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_005532_030 Hb_005532_030 Hb_002374_180--Hb_005532_030 Hb_008536_020 Hb_008536_020 Hb_002374_180--Hb_008536_020 Hb_002600_170--Hb_006831_090 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_002600_170--Hb_004032_280 Hb_002600_170--Hb_005532_030 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_006075_030--Hb_006831_090 Hb_006075_030--Hb_000329_780 Hb_006075_030--Hb_002600_170 Hb_006075_030--Hb_005532_030 Hb_002572_040 Hb_002572_040 Hb_006075_030--Hb_002572_040 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_005532_030--Hb_006831_090 Hb_086300_010 Hb_086300_010 Hb_005532_030--Hb_086300_010 Hb_005532_030--Hb_000329_780 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_008536_020--Hb_004032_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.271735 3.17115 4.08696 0.0804955 0.0355878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.208479 5.40604

CAGE analysis