Hb_002374_210

Information

Type -
Description -
Location Contig2374: 170031-180168
Sequence    

Annotation

kegg
ID rcu:RCOM_0563460
description ubiquitin-protein ligase, putative
nr
ID XP_012078292.1
description PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
swissprot
ID Q5VRH9
description U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1
trembl
ID A0A067KM12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12131 PE=4 SV=1
Gene Ontology
ID GO:0016874
description armadillo beta-catenin-like c2 calcium lipid-binding domain protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24865: 169811-170075 , PASA_asmbl_24868: 172471-175470 , PASA_asmbl_24869: 175556-176363 , PASA_asmbl_24870: 176378-177085 , PASA_asmbl_24871: 177106-180364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_210 0.0 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
2 Hb_005298_020 0.0770553018 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
3 Hb_044486_040 0.078542802 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
4 Hb_001646_010 0.0824821563 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
5 Hb_000243_130 0.0862082902 - - hypothetical protein M569_10795, partial [Genlisea aurea]
6 Hb_007894_160 0.0900235496 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
7 Hb_004064_050 0.0983563454 - - Structural maintenance of chromosome, putative [Ricinus communis]
8 Hb_000256_020 0.0989117371 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
9 Hb_003216_090 0.1037387126 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
10 Hb_158092_080 0.1038767182 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
11 Hb_006478_030 0.103929917 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_007123_050 0.1089758225 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
13 Hb_000010_420 0.1094892374 - - Callose synthase 10 [Morus notabilis]
14 Hb_178968_050 0.1108121244 - - PREDICTED: probable serine incorporator [Jatropha curcas]
15 Hb_004411_030 0.1118007679 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
16 Hb_080147_050 0.1137764414 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
17 Hb_007245_020 0.1142752386 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
18 Hb_006829_100 0.115936633 - - conserved hypothetical protein [Ricinus communis]
19 Hb_088144_020 0.1161386423 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
20 Hb_001085_290 0.1165852751 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002374_210 Hb_002374_210 Hb_005298_020 Hb_005298_020 Hb_002374_210--Hb_005298_020 Hb_044486_040 Hb_044486_040 Hb_002374_210--Hb_044486_040 Hb_001646_010 Hb_001646_010 Hb_002374_210--Hb_001646_010 Hb_000243_130 Hb_000243_130 Hb_002374_210--Hb_000243_130 Hb_007894_160 Hb_007894_160 Hb_002374_210--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_002374_210--Hb_004064_050 Hb_158845_060 Hb_158845_060 Hb_005298_020--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_005298_020--Hb_024758_020 Hb_080147_050 Hb_080147_050 Hb_005298_020--Hb_080147_050 Hb_002007_260 Hb_002007_260 Hb_005298_020--Hb_002007_260 Hb_005298_020--Hb_007894_160 Hb_044486_040--Hb_001646_010 Hb_044486_040--Hb_000243_130 Hb_001221_090 Hb_001221_090 Hb_044486_040--Hb_001221_090 Hb_001904_030 Hb_001904_030 Hb_044486_040--Hb_001904_030 Hb_011202_030 Hb_011202_030 Hb_044486_040--Hb_011202_030 Hb_001341_160 Hb_001341_160 Hb_044486_040--Hb_001341_160 Hb_001646_010--Hb_001341_160 Hb_001646_010--Hb_011202_030 Hb_000010_420 Hb_000010_420 Hb_001646_010--Hb_000010_420 Hb_002005_030 Hb_002005_030 Hb_001646_010--Hb_002005_030 Hb_000243_130--Hb_007894_160 Hb_000243_130--Hb_004064_050 Hb_033554_020 Hb_033554_020 Hb_000243_130--Hb_033554_020 Hb_002475_040 Hb_002475_040 Hb_000243_130--Hb_002475_040 Hb_009486_080 Hb_009486_080 Hb_000243_130--Hb_009486_080 Hb_000610_040 Hb_000610_040 Hb_007894_160--Hb_000610_040 Hb_008397_010 Hb_008397_010 Hb_007894_160--Hb_008397_010 Hb_002686_040 Hb_002686_040 Hb_007894_160--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_007894_160--Hb_103747_020 Hb_007894_160--Hb_002475_040 Hb_004064_050--Hb_002475_040 Hb_158092_080 Hb_158092_080 Hb_004064_050--Hb_158092_080 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68599 4.52877 4.08088 3.17397 3.43168 2.69459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.502638 0.662491 2.03358 5.39106 3.71851

CAGE analysis