Hb_002374_230

Information

Type -
Description -
Location Contig2374: 191868-208025
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08180g
description POPTRDRAFT_551430, POPTRDRAFT_551431; hypothetical protein
nr
ID XP_012078296.1
description PREDICTED: centromere-associated protein E [Jatropha curcas]
swissprot
ID Q6S001
description Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1
trembl
ID A0A067K9E0
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_12133 PE=3 SV=1
Gene Ontology
ID GO:0005871
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24872: 196723-196926 , PASA_asmbl_24873: 198636-199424 , PASA_asmbl_24874: 199440-203263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_230 0.0 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
2 Hb_003093_040 0.0750769356 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
3 Hb_003159_140 0.0766409747 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005542_130 0.0786239488 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
5 Hb_000175_410 0.0817379648 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
6 Hb_030414_040 0.0821728396 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
7 Hb_001158_160 0.0843144335 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
8 Hb_000254_100 0.0936658731 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
9 Hb_001089_070 0.0942406702 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
10 Hb_031284_010 0.0953321531 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
11 Hb_000390_230 0.0959160876 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
12 Hb_034243_040 0.096726558 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
13 Hb_057688_010 0.0981396104 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
14 Hb_000603_030 0.0998155712 - - Ribonuclease III, putative [Ricinus communis]
15 Hb_021943_080 0.1005873152 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
16 Hb_028960_020 0.1007362261 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
17 Hb_000321_140 0.1016083391 - - RNA-binding protein, putative [Ricinus communis]
18 Hb_001153_210 0.1017739887 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
19 Hb_002889_010 0.1023253007 - - ubx domain-containing, putative [Ricinus communis]
20 Hb_000847_080 0.1023995294 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_230 Hb_002374_230 Hb_003093_040 Hb_003093_040 Hb_002374_230--Hb_003093_040 Hb_003159_140 Hb_003159_140 Hb_002374_230--Hb_003159_140 Hb_005542_130 Hb_005542_130 Hb_002374_230--Hb_005542_130 Hb_000175_410 Hb_000175_410 Hb_002374_230--Hb_000175_410 Hb_030414_040 Hb_030414_040 Hb_002374_230--Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_002374_230--Hb_001158_160 Hb_000011_270 Hb_000011_270 Hb_003093_040--Hb_000011_270 Hb_003093_040--Hb_000175_410 Hb_001221_180 Hb_001221_180 Hb_003093_040--Hb_001221_180 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120 Hb_001040_100 Hb_001040_100 Hb_003159_140--Hb_001040_100 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_003159_140--Hb_005542_130 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_000035_470 Hb_000035_470 Hb_003159_140--Hb_000035_470 Hb_000757_030 Hb_000757_030 Hb_005542_130--Hb_000757_030 Hb_003292_030 Hb_003292_030 Hb_005542_130--Hb_003292_030 Hb_001623_270 Hb_001623_270 Hb_005542_130--Hb_001623_270 Hb_000789_320 Hb_000789_320 Hb_005542_130--Hb_000789_320 Hb_003186_020 Hb_003186_020 Hb_000175_410--Hb_003186_020 Hb_013358_070 Hb_013358_070 Hb_000175_410--Hb_013358_070 Hb_031284_010 Hb_031284_010 Hb_000175_410--Hb_031284_010 Hb_000175_410--Hb_000011_270 Hb_000523_080 Hb_000523_080 Hb_000175_410--Hb_000523_080 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_000826_030 Hb_000826_030 Hb_001158_160--Hb_000826_030 Hb_021943_080 Hb_021943_080 Hb_001158_160--Hb_021943_080 Hb_001158_160--Hb_031284_010 Hb_001158_160--Hb_000120_210 Hb_001158_160--Hb_004096_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35711 1.27346 2.91493 1.09115 1.61879 1.47385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1381 1.29007 0.615742 2.36571 2.07879

CAGE analysis