Hb_002374_260

Information

Type -
Description -
Location Contig2374: 225113-227677
Sequence    

Annotation

kegg
ID rcu:RCOM_0563810
description s-adenosyl-methyltransferase mraw, putative
nr
ID XP_012078299.1
description PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
swissprot
ID Q6MEG4
description Ribosomal RNA small subunit methyltransferase H OS=Protochlamydia amoebophila (strain UWE25) GN=rsmH PE=3 SV=1
trembl
ID A0A067KM18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12136 PE=3 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase-like protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24880: 225654-226053 , PASA_asmbl_24882: 227075-227679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_260 0.0 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
2 Hb_003878_110 0.0641994223 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
3 Hb_003638_090 0.0652896217 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
4 Hb_000152_260 0.0700835782 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
5 Hb_002304_060 0.0701465233 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
6 Hb_001377_110 0.0712572246 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
7 Hb_005332_020 0.0739788334 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_002311_310 0.0794792749 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
9 Hb_001427_190 0.0799873424 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
10 Hb_011310_130 0.0808580195 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
11 Hb_005289_040 0.080922125 - - poly(A) polymerase, putative [Ricinus communis]
12 Hb_032202_080 0.0827593384 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
13 Hb_002684_040 0.083788202 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
14 Hb_001635_040 0.0845103872 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
15 Hb_000086_560 0.0846938789 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
16 Hb_019654_040 0.0848043852 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
17 Hb_162286_010 0.0852362771 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
18 Hb_000679_340 0.0852645922 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
19 Hb_008568_020 0.0857237189 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
20 Hb_022256_060 0.0864678435 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_260 Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_002374_260--Hb_003878_110 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_000152_260 Hb_000152_260 Hb_002374_260--Hb_000152_260 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110 Hb_005332_020 Hb_005332_020 Hb_002374_260--Hb_005332_020 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_003878_110--Hb_001433_070 Hb_000331_110 Hb_000331_110 Hb_003878_110--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_003878_110--Hb_079526_030 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_005289_040 Hb_005289_040 Hb_003638_090--Hb_005289_040 Hb_001488_200 Hb_001488_200 Hb_003638_090--Hb_001488_200 Hb_019654_040 Hb_019654_040 Hb_003638_090--Hb_019654_040 Hb_002805_190 Hb_002805_190 Hb_003638_090--Hb_002805_190 Hb_005965_030 Hb_005965_030 Hb_003638_090--Hb_005965_030 Hb_002749_110 Hb_002749_110 Hb_000152_260--Hb_002749_110 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_002422_050 Hb_002422_050 Hb_000152_260--Hb_002422_050 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_000152_260--Hb_003878_110 Hb_000917_320 Hb_000917_320 Hb_002304_060--Hb_000917_320 Hb_002304_060--Hb_001377_110 Hb_004800_180 Hb_004800_180 Hb_002304_060--Hb_004800_180 Hb_000224_150 Hb_000224_150 Hb_002304_060--Hb_000224_150 Hb_000085_140 Hb_000085_140 Hb_002304_060--Hb_000085_140 Hb_098209_010 Hb_098209_010 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_001021_220 Hb_001021_220 Hb_001377_110--Hb_001021_220 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_005332_020--Hb_002422_050 Hb_008887_020 Hb_008887_020 Hb_005332_020--Hb_008887_020 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5178 6.62332 10.9662 5.02324 8.30514 10.8411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65227 4.36196 3.24763 6.82605 6.76042

CAGE analysis