Hb_002374_270

Information

Type -
Description -
Location Contig2374: 228839-229843
Sequence    

Annotation

kegg
ID rcu:RCOM_0563820
description hypothetical protein
nr
ID XP_002520348.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6YXX9
description Guanine nucleotide-binding protein subunit gamma 2 OS=Oryza sativa subsp. japonica GN=RGG2 PE=1 SV=1
trembl
ID B9S2X9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0563820 PE=4 SV=1
Gene Ontology
ID GO:0005834
description guanine nucleotide-binding protein subunit gamma 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24883: 228934-229918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029253_010 0.0954439408 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
3 Hb_002235_060 0.0988540803 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
4 Hb_000940_210 0.1084636954 - - cyclophilin [Hevea brasiliensis]
5 Hb_003964_080 0.1092976657 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
6 Hb_003894_030 0.1111661648 - - plant sec1, putative [Ricinus communis]
7 Hb_005357_110 0.1219818301 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
8 Hb_003670_030 0.1222215361 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
9 Hb_000000_480 0.1234172106 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
10 Hb_002325_060 0.1256788492 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
11 Hb_000757_130 0.127363604 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003740_020 0.1274514453 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000922_320 0.1284393019 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
14 Hb_000740_090 0.1299055838 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001155_050 0.1347303779 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
16 Hb_006925_050 0.138862596 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
17 Hb_147245_010 0.1390758982 - - casein kinase, putative [Ricinus communis]
18 Hb_000637_020 0.1396681939 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
19 Hb_004218_130 0.139922747 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
20 Hb_003430_080 0.1421964342 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_270 Hb_002374_270 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_147245_010 Hb_147245_010 Hb_002235_060--Hb_147245_010 Hb_000922_320 Hb_000922_320 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002325_060 Hb_002325_060 Hb_002235_060--Hb_002325_060 Hb_000928_120 Hb_000928_120 Hb_002235_060--Hb_000928_120 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210 Hb_000753_160 Hb_000753_160 Hb_003964_080--Hb_000753_160 Hb_000134_120 Hb_000134_120 Hb_003964_080--Hb_000134_120 Hb_007919_110 Hb_007919_110 Hb_003964_080--Hb_007919_110 Hb_002217_320 Hb_002217_320 Hb_003964_080--Hb_002217_320 Hb_005511_130 Hb_005511_130 Hb_003964_080--Hb_005511_130 Hb_003894_030--Hb_003740_020 Hb_013405_070 Hb_013405_070 Hb_003894_030--Hb_013405_070 Hb_003894_030--Hb_029253_010 Hb_003894_030--Hb_000000_480 Hb_000527_080 Hb_000527_080 Hb_003894_030--Hb_000527_080 Hb_005357_110--Hb_000032_410 Hb_005357_110--Hb_003740_020 Hb_000915_130 Hb_000915_130 Hb_005357_110--Hb_000915_130 Hb_004730_020 Hb_004730_020 Hb_005357_110--Hb_004730_020 Hb_005357_110--Hb_005511_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84471 20.7282 43.417 57.1156 2.48925 4.65321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94932 9.117 6.18873 13.443 13.3857

CAGE analysis