Hb_002374_290

Information

Type -
Description -
Location Contig2374: 232373-242734
Sequence    

Annotation

kegg
ID rcu:RCOM_0563830
description ubiquitin specific protease, putative (EC:3.1.2.15)
nr
ID XP_012087821.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
swissprot
ID Q9SCJ9
description Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=3
trembl
ID A0A067JX40
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_26566 PE=3 SV=1
Gene Ontology
ID GO:0004843
description ubiquitin carboxyl-terminal hydrolase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24884: 230676-234749 , PASA_asmbl_24885: 238871-239044 , PASA_asmbl_24887: 241060-242517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_290 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
2 Hb_001541_250 0.0648956627 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
3 Hb_000069_130 0.0674670049 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
4 Hb_002542_130 0.0682050441 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
5 Hb_007426_060 0.0750217561 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
6 Hb_029977_040 0.0768210838 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
7 Hb_001534_210 0.0788669186 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
8 Hb_007054_040 0.0814390028 - - PREDICTED: protein RST1 [Jatropha curcas]
9 Hb_001935_140 0.0821409697 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
10 Hb_000094_090 0.0821519447 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
11 Hb_008948_140 0.0826121199 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
12 Hb_000479_240 0.0828782017 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
13 Hb_005188_040 0.0833499118 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
14 Hb_000862_040 0.0835276732 - - ara4-interacting protein, putative [Ricinus communis]
15 Hb_000003_400 0.0842024911 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_004976_010 0.0850161969 - - hypothetical protein RCOM_1429110 [Ricinus communis]
17 Hb_002811_040 0.0852824541 - - 5'->3' exoribonuclease, putative [Ricinus communis]
18 Hb_001862_110 0.0862659828 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
19 Hb_012565_050 0.086522922 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
20 Hb_007818_030 0.0872029179 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]

Gene co-expression network

sample Hb_002374_290 Hb_002374_290 Hb_001541_250 Hb_001541_250 Hb_002374_290--Hb_001541_250 Hb_000069_130 Hb_000069_130 Hb_002374_290--Hb_000069_130 Hb_002542_130 Hb_002542_130 Hb_002374_290--Hb_002542_130 Hb_007426_060 Hb_007426_060 Hb_002374_290--Hb_007426_060 Hb_029977_040 Hb_029977_040 Hb_002374_290--Hb_029977_040 Hb_001534_210 Hb_001534_210 Hb_002374_290--Hb_001534_210 Hb_007054_040 Hb_007054_040 Hb_001541_250--Hb_007054_040 Hb_001862_110 Hb_001862_110 Hb_001541_250--Hb_001862_110 Hb_001935_140 Hb_001935_140 Hb_001541_250--Hb_001935_140 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_003912_040 Hb_003912_040 Hb_000069_130--Hb_003912_040 Hb_000402_230 Hb_000402_230 Hb_000069_130--Hb_000402_230 Hb_000809_160 Hb_000809_160 Hb_000069_130--Hb_000809_160 Hb_001089_050 Hb_001089_050 Hb_000069_130--Hb_001089_050 Hb_000069_130--Hb_002542_130 Hb_001231_090 Hb_001231_090 Hb_002542_130--Hb_001231_090 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_002282_060 Hb_002282_060 Hb_002542_130--Hb_002282_060 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_007426_060--Hb_001534_210 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100 Hb_029977_040--Hb_000099_040 Hb_002768_050 Hb_002768_050 Hb_029977_040--Hb_002768_050 Hb_001617_040 Hb_001617_040 Hb_029977_040--Hb_001617_040 Hb_004976_010 Hb_004976_010 Hb_029977_040--Hb_004976_010 Hb_001279_120 Hb_001279_120 Hb_029977_040--Hb_001279_120 Hb_029977_040--Hb_005542_140 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_001534_210--Hb_000099_040 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19645 10.3591 5.19369 4.15559 4.21039 4.84351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04167 3.51837 1.80662 4.63232 4.54516

CAGE analysis