Hb_002374_320

Information

Type -
Description -
Location Contig2374: 265856-271056
Sequence    

Annotation

kegg
ID rcu:RCOM_1030540
description protein disulfide isomerase, putative (EC:2.4.1.119)
nr
ID KDP32815.1
description hypothetical protein JCGZ_12107 [Jatropha curcas]
swissprot
ID Q43116
description Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1
trembl
ID A0A067KKM7
description Protein disulfide-isomerase OS=Jatropha curcas GN=JCGZ_12107 PE=3 SV=1
Gene Ontology
ID GO:0005788
description pdi-like 1-1 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24893: 265916-271112 , PASA_asmbl_24894: 266119-266229
cDNA
(Sanger)
(ID:Location)		 009_I12.ab1: 265924-267806 , 032_C15.ab1: 265924-267804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_320 0.0 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
2 Hb_011930_080 0.0555378609 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
3 Hb_006478_060 0.0657957025 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
4 Hb_001832_130 0.0780148069 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
5 Hb_001307_080 0.0796883027 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
6 Hb_000406_230 0.0812058575 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
7 Hb_003040_020 0.0834490898 - - PREDICTED: protein cereblon [Jatropha curcas]
8 Hb_010053_030 0.0835101747 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
9 Hb_000960_050 0.0835370227 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
10 Hb_118840_050 0.0847160013 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
11 Hb_067193_010 0.0870646643 - - -
12 Hb_000010_360 0.0872955965 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
13 Hb_004429_160 0.0876214632 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
14 Hb_006618_090 0.0902368076 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
15 Hb_000120_620 0.090952739 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
16 Hb_000648_100 0.0916113412 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
17 Hb_000191_130 0.0926235256 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
18 Hb_003739_030 0.0938944986 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
19 Hb_000577_030 0.0942752129 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
20 Hb_001301_220 0.0946770598 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_320 Hb_002374_320 Hb_011930_080 Hb_011930_080 Hb_002374_320--Hb_011930_080 Hb_006478_060 Hb_006478_060 Hb_002374_320--Hb_006478_060 Hb_001832_130 Hb_001832_130 Hb_002374_320--Hb_001832_130 Hb_001307_080 Hb_001307_080 Hb_002374_320--Hb_001307_080 Hb_000406_230 Hb_000406_230 Hb_002374_320--Hb_000406_230 Hb_003040_020 Hb_003040_020 Hb_002374_320--Hb_003040_020 Hb_001427_190 Hb_001427_190 Hb_011930_080--Hb_001427_190 Hb_019654_040 Hb_019654_040 Hb_011930_080--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_011930_080--Hb_000648_100 Hb_002078_100 Hb_002078_100 Hb_011930_080--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_011930_080--Hb_002888_070 Hb_010053_030 Hb_010053_030 Hb_006478_060--Hb_010053_030 Hb_006478_060--Hb_011930_080 Hb_000923_080 Hb_000923_080 Hb_006478_060--Hb_000923_080 Hb_001621_130 Hb_001621_130 Hb_006478_060--Hb_001621_130 Hb_174821_010 Hb_174821_010 Hb_006478_060--Hb_174821_010 Hb_001301_220 Hb_001301_220 Hb_001832_130--Hb_001301_220 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_003125_070 Hb_003125_070 Hb_001832_130--Hb_003125_070 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180 Hb_004429_160 Hb_004429_160 Hb_001307_080--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_001307_080--Hb_003040_020 Hb_023344_010 Hb_023344_010 Hb_000406_230--Hb_023344_010 Hb_007558_070 Hb_007558_070 Hb_000406_230--Hb_007558_070 Hb_000406_230--Hb_000010_360 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_003040_020--Hb_004429_160 Hb_000032_010 Hb_000032_010 Hb_003040_020--Hb_000032_010 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_019153_020 Hb_019153_020 Hb_003040_020--Hb_019153_020 Hb_000856_140 Hb_000856_140 Hb_003040_020--Hb_000856_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.9639 118.709 100.06 69.8767 164.25 150.59
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.7015 30.7809 37.0771 114.587 49.3853

CAGE analysis