Hb_002374_380

Information

Type -
Description -
Location Contig2374: 361227-362178
Sequence    

Annotation

kegg
ID tcc:TCM_035133
description Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1
nr
ID XP_007019086.1
description Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID Q9CAQ2
description Acetyltransferase At1g77540 OS=Arabidopsis thaliana GN=At1g77540 PE=1 SV=2
trembl
ID A0A061FGX1
description Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_035133 PE=4 SV=1
Gene Ontology
ID GO:0016746
description acetyltransferase at1g77540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24904: 361235-362095 , PASA_asmbl_24905: 362888-364778
cDNA
(Sanger)
(ID:Location)		 012_O15.ab1: 363033-364723 , 013_M13.ab1: 362922-363159 , 014_L15.ab1: 363009-364699 , 024_I12.ab1: 363070-364709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_380 0.0 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
2 Hb_000694_060 0.14672013 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
3 Hb_001433_110 0.1477237999 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
4 Hb_004453_080 0.1524655362 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
5 Hb_105602_010 0.1564778678 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
6 Hb_003442_070 0.1619614186 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
7 Hb_007850_080 0.1635335134 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
8 Hb_008226_080 0.1659074259 - - Protein LRP16, putative [Ricinus communis]
9 Hb_002236_050 0.1687431421 - - -
10 Hb_000948_080 0.1698949674 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
11 Hb_017170_030 0.1806096855 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
12 Hb_004631_210 0.1843198491 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
13 Hb_001486_030 0.1852198424 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001341_100 0.1852297673 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
15 Hb_008948_120 0.18561584 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_007153_040 0.1862541412 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
17 Hb_000163_050 0.186314557 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
18 Hb_007317_080 0.1873567911 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
19 Hb_000252_110 0.1884778616 - - -
20 Hb_004064_010 0.1895356228 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002374_380 Hb_002374_380 Hb_000694_060 Hb_000694_060 Hb_002374_380--Hb_000694_060 Hb_001433_110 Hb_001433_110 Hb_002374_380--Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_003442_070 Hb_003442_070 Hb_002374_380--Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_002374_380--Hb_007850_080 Hb_000868_100 Hb_000868_100 Hb_000694_060--Hb_000868_100 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_001433_110--Hb_004453_080 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_000252_110 Hb_000252_110 Hb_001433_110--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_001433_110--Hb_028487_170 Hb_001059_120 Hb_001059_120 Hb_001433_110--Hb_001059_120 Hb_004453_080--Hb_007850_080 Hb_004453_080--Hb_000252_110 Hb_004453_080--Hb_028487_170 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_009687_010 Hb_009687_010 Hb_105602_010--Hb_009687_010 Hb_004064_010 Hb_004064_010 Hb_105602_010--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_105602_010--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_105602_010--Hb_003266_100 Hb_001332_040 Hb_001332_040 Hb_105602_010--Hb_001332_040 Hb_000103_270 Hb_000103_270 Hb_105602_010--Hb_000103_270 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_007850_080--Hb_008226_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64996 9.23359 4.67223 5.1116 1.29896 1.21664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0084 19.4044 6.65077 17.5944 2.84461

CAGE analysis