Hb_002374_390

Information

Type -
Description -
Location Contig2374: 362908-364853
Sequence    

Annotation

kegg
ID rcu:RCOM_0292270
description vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative
nr
ID XP_002513005.1
description vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
swissprot
ID Q43434
description V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1
trembl
ID B9RG53
description Vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative OS=Ricinus communis GN=RCOM_0292270 PE=3 SV=1
Gene Ontology
ID GO:0000220
description v-type proton atpase 16 kda proteolipid subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24905: 362888-364778
cDNA
(Sanger)
(ID:Location)		 012_O15.ab1: 363033-364723 , 013_M13.ab1: 362922-363159 , 014_L15.ab1: 363009-364699 , 024_I12.ab1: 363070-364709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_390 0.0 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
2 Hb_000181_300 0.0615401058 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
3 Hb_001016_090 0.0679802124 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
4 Hb_000364_030 0.0682192726 - - RNA binding protein, putative [Ricinus communis]
5 Hb_005731_170 0.0720234702 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
6 Hb_003185_050 0.0743663541 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
7 Hb_000905_180 0.0777776986 - - 60S ribosomal protein L31A [Hevea brasiliensis]
8 Hb_148200_010 0.0788104105 - - hypothetical protein 33 [Hevea brasiliensis]
9 Hb_000193_120 0.0794262124 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
10 Hb_005883_100 0.0821397628 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
11 Hb_006573_220 0.0824051116 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
12 Hb_001191_090 0.0828902469 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
13 Hb_003053_030 0.0860770685 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
14 Hb_000347_410 0.0864908937 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
15 Hb_001005_080 0.0866080078 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_004156_040 0.08799959 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
17 Hb_000115_230 0.0881578545 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_000012_100 0.0888412797 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
19 Hb_000363_480 0.0891299465 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
20 Hb_004586_320 0.0899154761 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_390 Hb_002374_390 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_001016_090 Hb_001016_090 Hb_002374_390--Hb_001016_090 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_003185_050 Hb_003185_050 Hb_002374_390--Hb_003185_050 Hb_000905_180 Hb_000905_180 Hb_002374_390--Hb_000905_180 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_003053_030 Hb_003053_030 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_000364_030--Hb_003053_030 Hb_000364_030--Hb_000181_300 Hb_000364_030--Hb_001191_090 Hb_000364_030--Hb_148200_010 Hb_011644_030 Hb_011644_030 Hb_000364_030--Hb_011644_030 Hb_003455_040 Hb_003455_040 Hb_005731_170--Hb_003455_040 Hb_001998_050 Hb_001998_050 Hb_005731_170--Hb_001998_050 Hb_005731_170--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_005731_170--Hb_003376_030 Hb_001829_060 Hb_001829_060 Hb_005731_170--Hb_001829_060 Hb_000349_290 Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_003185_050--Hb_000905_180 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_003185_050--Hb_001016_090 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000236_150 Hb_000236_150 Hb_000905_180--Hb_000236_150 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.473 44.9882 48.1759 71.0388 53.5559 80.1172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
214.253 286.267 207.776 93.4422 33.0285

CAGE analysis