Hb_002374_400

Information

Type transcription factor
Description TF Family: TRAF
Location Contig2374: 366225-369791
Sequence    

Annotation

kegg
ID rcu:RCOM_1030620
description protein with unknown function
nr
ID XP_002513752.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9XHZ8
description BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1
trembl
ID B9RJ33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030620 PE=4 SV=1
Gene Ontology
ID GO:0031463
description btb poz domain-containing protein at1g21780-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24907: 366240-369779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_400 0.0 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
2 Hb_003185_050 0.1027426108 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
3 Hb_005000_180 0.1030132307 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
4 Hb_002138_010 0.1067040029 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
5 Hb_002374_390 0.1096640427 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
6 Hb_001005_080 0.1097354898 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_001016_090 0.1161855533 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
8 Hb_152910_020 0.116816723 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
9 Hb_001481_140 0.1195930759 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
10 Hb_004931_100 0.1213177808 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
11 Hb_032260_030 0.1236910613 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
12 Hb_001157_010 0.1271700669 - - deoxyhypusine synthase, putative [Ricinus communis]
13 Hb_000239_030 0.1273657299 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
14 Hb_000115_230 0.1290750725 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_003783_030 0.1309102587 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
16 Hb_000236_150 0.1319176799 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_001519_030 0.1325414289 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
18 Hb_005391_030 0.1325441491 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
19 Hb_001832_120 0.1348450278 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
20 Hb_007192_100 0.1350870286 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_002374_400 Hb_002374_400 Hb_003185_050 Hb_003185_050 Hb_002374_400--Hb_003185_050 Hb_005000_180 Hb_005000_180 Hb_002374_400--Hb_005000_180 Hb_002138_010 Hb_002138_010 Hb_002374_400--Hb_002138_010 Hb_002374_390 Hb_002374_390 Hb_002374_400--Hb_002374_390 Hb_001005_080 Hb_001005_080 Hb_002374_400--Hb_001005_080 Hb_001016_090 Hb_001016_090 Hb_002374_400--Hb_001016_090 Hb_000349_290 Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_003185_050--Hb_002374_390 Hb_000905_180 Hb_000905_180 Hb_003185_050--Hb_000905_180 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_003185_050--Hb_001016_090 Hb_062135_020 Hb_062135_020 Hb_005000_180--Hb_062135_020 Hb_000163_210 Hb_000163_210 Hb_005000_180--Hb_000163_210 Hb_000302_290 Hb_000302_290 Hb_005000_180--Hb_000302_290 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_002374_390--Hb_001016_090 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_002374_390--Hb_000905_180 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5438 20.2342 10.0779 28.2727 13.6475 14.192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.673 118.339 95.9174 52.0821 10.261

CAGE analysis