Hb_002374_430

Information

Type -
Description -
Location Contig2374: 378695-379710
Sequence    

Annotation

kegg
ID rcu:RCOM_0953390
description hypothetical protein
nr
ID XP_002515858.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQ39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0953390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_430 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002131_040 0.2549729925 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
3 Hb_008725_150 0.2670754126 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_004137_070 0.2800551263 - - -
5 Hb_099864_010 0.2892411328 - - Disease resistance protein RPM1, putative [Ricinus communis]
6 Hb_015707_010 0.289258456 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
7 Hb_000608_060 0.2896101576 - - -
8 Hb_159921_010 0.2896743363 - - -
9 Hb_000733_210 0.2948074207 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
10 Hb_000230_080 0.2952452091 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_171789_010 0.2954183553 - - phosphoenolpyruvate carboxylase [Glycine max]
12 Hb_002666_020 0.2955150654 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
13 Hb_000021_030 0.2967366722 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_000252_250 0.2970464992 - - unknown [Lotus japonicus]
15 Hb_000038_030 0.297812814 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
16 Hb_097968_010 0.2984542381 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
17 Hb_000739_220 0.2991992908 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
18 Hb_000853_400 0.2998008858 - - PREDICTED: CTP synthase [Jatropha curcas]
19 Hb_012522_010 0.3010675075 - - hypothetical protein VITISV_003261 [Vitis vinifera]
20 Hb_005914_150 0.3022737481 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_430 Hb_002374_430 Hb_002131_040 Hb_002131_040 Hb_002374_430--Hb_002131_040 Hb_008725_150 Hb_008725_150 Hb_002374_430--Hb_008725_150 Hb_004137_070 Hb_004137_070 Hb_002374_430--Hb_004137_070 Hb_099864_010 Hb_099864_010 Hb_002374_430--Hb_099864_010 Hb_015707_010 Hb_015707_010 Hb_002374_430--Hb_015707_010 Hb_000608_060 Hb_000608_060 Hb_002374_430--Hb_000608_060 Hb_006816_170 Hb_006816_170 Hb_002131_040--Hb_006816_170 Hb_024505_050 Hb_024505_050 Hb_002131_040--Hb_024505_050 Hb_001329_240 Hb_001329_240 Hb_002131_040--Hb_001329_240 Hb_002131_040--Hb_008725_150 Hb_001247_200 Hb_001247_200 Hb_002131_040--Hb_001247_200 Hb_004316_070 Hb_004316_070 Hb_008725_150--Hb_004316_070 Hb_106321_030 Hb_106321_030 Hb_008725_150--Hb_106321_030 Hb_004137_060 Hb_004137_060 Hb_008725_150--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_008725_150--Hb_000832_130 Hb_004767_090 Hb_004767_090 Hb_008725_150--Hb_004767_090 Hb_002239_040 Hb_002239_040 Hb_008725_150--Hb_002239_040 Hb_002928_060 Hb_002928_060 Hb_004137_070--Hb_002928_060 Hb_110364_010 Hb_110364_010 Hb_004137_070--Hb_110364_010 Hb_007188_070 Hb_007188_070 Hb_004137_070--Hb_007188_070 Hb_000252_250 Hb_000252_250 Hb_004137_070--Hb_000252_250 Hb_009969_030 Hb_009969_030 Hb_004137_070--Hb_009969_030 Hb_002601_120 Hb_002601_120 Hb_004137_070--Hb_002601_120 Hb_182424_010 Hb_182424_010 Hb_099864_010--Hb_182424_010 Hb_038011_010 Hb_038011_010 Hb_099864_010--Hb_038011_010 Hb_000431_020 Hb_000431_020 Hb_099864_010--Hb_000431_020 Hb_011218_060 Hb_011218_060 Hb_099864_010--Hb_011218_060 Hb_127003_010 Hb_127003_010 Hb_099864_010--Hb_127003_010 Hb_011287_090 Hb_011287_090 Hb_099864_010--Hb_011287_090 Hb_097968_010 Hb_097968_010 Hb_015707_010--Hb_097968_010 Hb_002028_100 Hb_002028_100 Hb_015707_010--Hb_002028_100 Hb_003881_050 Hb_003881_050 Hb_015707_010--Hb_003881_050 Hb_015707_010--Hb_038011_010 Hb_015707_010--Hb_099864_010 Hb_090497_010 Hb_090497_010 Hb_015707_010--Hb_090497_010 Hb_000009_620 Hb_000009_620 Hb_000608_060--Hb_000009_620 Hb_000608_060--Hb_000252_250 Hb_011218_080 Hb_011218_080 Hb_000608_060--Hb_011218_080 Hb_002259_040 Hb_002259_040 Hb_000608_060--Hb_002259_040 Hb_002025_310 Hb_002025_310 Hb_000608_060--Hb_002025_310 Hb_002299_050 Hb_002299_050 Hb_000608_060--Hb_002299_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517315 0.195043 0.118905 0.0625732 0.354403 0.541076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120719 0 0.488239 0.431303 0

CAGE analysis