Hb_002374_440

Information

Type -
Description -
Location Contig2374: 382563-382898
Sequence    

Annotation

kegg
ID rcu:RCOM_1030660
description hypothetical protein
nr
ID XP_002513756.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1
Gene Ontology
ID GO:0006457
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24908: 382530-383104
cDNA
(Sanger)
(ID:Location)		 014_B16.ab1: 382530-383104 , 021_F09.ab1: 382532-382997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_440 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029388_040 0.1063434017 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
3 Hb_005228_100 0.1085800884 - - -
4 Hb_012340_020 0.1213927893 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
5 Hb_004374_050 0.123577065 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001769_020 0.1341910258 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
7 Hb_003688_200 0.1347640771 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000152_560 0.1418101526 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
9 Hb_010068_030 0.1443137775 - - aconitase, putative [Ricinus communis]
10 Hb_003097_190 0.1501265626 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
11 Hb_002311_250 0.1541750832 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
12 Hb_001946_360 0.1542868318 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
13 Hb_000206_130 0.1617344214 - - unnamed protein product [Vitis vinifera]
14 Hb_000008_230 0.1659451917 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
15 Hb_001534_070 0.1668725607 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
16 Hb_106321_030 0.1678470545 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_017711_020 0.1717503714 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
18 Hb_000739_290 0.1720869073 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000258_130 0.1730538376 - - -
20 Hb_006816_120 0.1763599549 - - Nicotianamine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_440 Hb_002374_440 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_012340_020 Hb_012340_020 Hb_002374_440--Hb_012340_020 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_029388_040--Hb_005228_100 Hb_029388_040--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_029388_040--Hb_106321_030 Hb_000152_560 Hb_000152_560 Hb_029388_040--Hb_000152_560 Hb_002168_020 Hb_002168_020 Hb_029388_040--Hb_002168_020 Hb_000771_160 Hb_000771_160 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_005228_100--Hb_004374_050 Hb_000739_290 Hb_000739_290 Hb_005228_100--Hb_000739_290 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_010068_030 Hb_010068_030 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_012340_020--Hb_003688_200 Hb_004374_050--Hb_001769_020 Hb_000258_130 Hb_000258_130 Hb_004374_050--Hb_000258_130 Hb_004374_050--Hb_010068_030 Hb_004645_040 Hb_004645_040 Hb_004374_050--Hb_004645_040 Hb_179511_010 Hb_179511_010 Hb_001769_020--Hb_179511_010 Hb_000008_230 Hb_000008_230 Hb_001769_020--Hb_000008_230 Hb_001769_020--Hb_010068_030 Hb_001769_020--Hb_012340_020 Hb_003688_200--Hb_010068_030 Hb_000120_570 Hb_000120_570 Hb_003688_200--Hb_000120_570 Hb_003097_190 Hb_003097_190 Hb_003688_200--Hb_003097_190 Hb_000755_080 Hb_000755_080 Hb_003688_200--Hb_000755_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.4306 116.872 10.268 18.8881 435.835 147.738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.3443 73.7383 62.763 42.4894 8.10478

CAGE analysis