Hb_002374_460

Information

Type -
Description -
Location Contig2374: 393485-396356
Sequence    

Annotation

kegg
ID rcu:RCOM_1030780
description hypothetical protein
nr
ID XP_002513758.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A8WGS4
description TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1
trembl
ID B9RJ39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030780 PE=4 SV=1
Gene Ontology
ID GO:0005739
description tlc domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24911: 393558-396511
cDNA
(Sanger)
(ID:Location)		 053_F02.ab1: 393558-396139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_460 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_600 0.1222695228 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
3 Hb_005000_290 0.1334233669 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
4 Hb_000252_040 0.1395364172 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
5 Hb_015934_020 0.1505774661 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
6 Hb_004453_140 0.1574428825 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
7 Hb_000111_280 0.1591373085 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
8 Hb_000012_450 0.1599328562 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
9 Hb_000352_140 0.1607020604 - - -
10 Hb_011457_170 0.1607766993 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
11 Hb_001946_320 0.1658150051 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
12 Hb_002307_090 0.1679834941 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
13 Hb_007810_030 0.1693926928 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
14 Hb_000777_060 0.1703507222 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002028_130 0.1713226035 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
16 Hb_000061_160 0.1722974022 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
17 Hb_000809_050 0.1726702549 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
18 Hb_001621_180 0.1734659872 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
19 Hb_000340_430 0.1749050085 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001258_080 0.1752522741 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_460 Hb_002374_460 Hb_000329_600 Hb_000329_600 Hb_002374_460--Hb_000329_600 Hb_005000_290 Hb_005000_290 Hb_002374_460--Hb_005000_290 Hb_000252_040 Hb_000252_040 Hb_002374_460--Hb_000252_040 Hb_015934_020 Hb_015934_020 Hb_002374_460--Hb_015934_020 Hb_004453_140 Hb_004453_140 Hb_002374_460--Hb_004453_140 Hb_000111_280 Hb_000111_280 Hb_002374_460--Hb_000111_280 Hb_000329_600--Hb_005000_290 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_005000_290--Hb_015934_020 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_001191_100 Hb_001191_100 Hb_000252_040--Hb_001191_100 Hb_001366_230 Hb_001366_230 Hb_000252_040--Hb_001366_230 Hb_000252_040--Hb_005000_290 Hb_000252_040--Hb_183963_020 Hb_000291_200 Hb_000291_200 Hb_000252_040--Hb_000291_200 Hb_000787_070 Hb_000787_070 Hb_000252_040--Hb_000787_070 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000648_060 Hb_000648_060 Hb_000111_280--Hb_000648_060 Hb_000111_280--Hb_183963_020 Hb_005694_080 Hb_005694_080 Hb_000111_280--Hb_005694_080 Hb_007021_020 Hb_007021_020 Hb_000111_280--Hb_007021_020 Hb_009252_130 Hb_009252_130 Hb_000111_280--Hb_009252_130 Hb_000567_170 Hb_000567_170 Hb_000111_280--Hb_000567_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4159 0 0.0541778 0.15837 3.3827 3.12274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.3681 5.94899 5.01162 0.699721 0.530263

CAGE analysis