Hb_002374_490

Information

Type -
Description -
Location Contig2374: 408761-411005
Sequence    

Annotation

kegg
ID rcu:RCOM_1031040
description hypothetical protein
nr
ID XP_002513762.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9STN5
description Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1
trembl
ID B9RJ43
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031040 PE=4 SV=1
Gene Ontology
ID GO:0005886
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24917: 408897-410933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_490 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002307_030 0.070995555 - - 40S ribosomal protein S15D [Hevea brasiliensis]
3 Hb_004297_100 0.0864270688 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
4 Hb_024835_030 0.0896697985 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
5 Hb_004645_050 0.0903252393 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
6 Hb_007747_090 0.0910011264 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
7 Hb_000156_130 0.0921706741 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
8 Hb_000977_080 0.0926254769 - - type II inositol 5-phosphatase, putative [Ricinus communis]
9 Hb_000045_130 0.0928036056 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
10 Hb_000189_270 0.0929192052 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
11 Hb_002311_350 0.0952392591 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
12 Hb_000483_160 0.0983614927 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
13 Hb_000318_380 0.098902181 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
14 Hb_000260_050 0.1001970808 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
15 Hb_003551_020 0.1009287534 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
16 Hb_004012_010 0.1013540639 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
17 Hb_001019_090 0.1037052566 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_028486_040 0.1038406442 - - 40S ribosomal protein S14, putative [Ricinus communis]
19 Hb_000376_050 0.1041095181 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_000531_020 0.1058869554 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]

Gene co-expression network

sample Hb_002374_490 Hb_002374_490 Hb_002307_030 Hb_002307_030 Hb_002374_490--Hb_002307_030 Hb_004297_100 Hb_004297_100 Hb_002374_490--Hb_004297_100 Hb_024835_030 Hb_024835_030 Hb_002374_490--Hb_024835_030 Hb_004645_050 Hb_004645_050 Hb_002374_490--Hb_004645_050 Hb_007747_090 Hb_007747_090 Hb_002374_490--Hb_007747_090 Hb_000156_130 Hb_000156_130 Hb_002374_490--Hb_000156_130 Hb_001243_050 Hb_001243_050 Hb_002307_030--Hb_001243_050 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002311_350 Hb_002311_350 Hb_002307_030--Hb_002311_350 Hb_000977_080 Hb_000977_080 Hb_002307_030--Hb_000977_080 Hb_000483_160 Hb_000483_160 Hb_004297_100--Hb_000483_160 Hb_001019_090 Hb_001019_090 Hb_004297_100--Hb_001019_090 Hb_005611_010 Hb_005611_010 Hb_004297_100--Hb_005611_010 Hb_000200_210 Hb_000200_210 Hb_004297_100--Hb_000200_210 Hb_000617_320 Hb_000617_320 Hb_004297_100--Hb_000617_320 Hb_004297_100--Hb_023732_070 Hb_004012_010 Hb_004012_010 Hb_024835_030--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_024835_030--Hb_002762_060 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_004920_040 Hb_004920_040 Hb_024835_030--Hb_004920_040 Hb_022250_040 Hb_022250_040 Hb_024835_030--Hb_022250_040 Hb_000056_340 Hb_000056_340 Hb_024835_030--Hb_000056_340 Hb_004645_050--Hb_000977_080 Hb_001235_210 Hb_001235_210 Hb_004645_050--Hb_001235_210 Hb_000189_270 Hb_000189_270 Hb_004645_050--Hb_000189_270 Hb_004645_050--Hb_002311_350 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_004645_050--Hb_002307_030 Hb_143813_010 Hb_143813_010 Hb_007747_090--Hb_143813_010 Hb_000260_050 Hb_000260_050 Hb_007747_090--Hb_000260_050 Hb_000318_380 Hb_000318_380 Hb_007747_090--Hb_000318_380 Hb_000045_130 Hb_000045_130 Hb_007747_090--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_007747_090--Hb_001369_650 Hb_007747_090--Hb_000977_080 Hb_002374_160 Hb_002374_160 Hb_000156_130--Hb_002374_160 Hb_000156_130--Hb_143813_010 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_001454_140 Hb_001454_140 Hb_000156_130--Hb_001454_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.6866 28.1013 5.35574 14.3259 48.7417 65.6629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2916 107.499 44.723 19.4242 4.48928

CAGE analysis