Hb_002374_510

Information

Type -
Description -
Location Contig2374: 413329-415120
Sequence    

Annotation

kegg
ID rcu:RCOM_1032350
description Esterase precursor, putative
nr
ID XP_002513813.1
description Esterase precursor, putative [Ricinus communis]
swissprot
ID Q9LIN2
description GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1
trembl
ID B9RJ94
description Esterase, putative OS=Ricinus communis GN=RCOM_1032350 PE=4 SV=1
Gene Ontology
ID GO:0016788
description early nodulin 8 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24919: 413338-415111 , PASA_asmbl_24920: 413612-415111
cDNA
(Sanger)
(ID:Location)		 014_C21.ab1: 413338-414188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_510 0.0 - - Esterase precursor, putative [Ricinus communis]
2 Hb_009122_010 0.0928899627 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_003371_280 0.1046670364 - - unnamed protein product [Vitis vinifera]
4 Hb_113766_010 0.1087517197 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
5 Hb_001269_660 0.1130012157 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
6 Hb_002370_020 0.1163758621 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_012395_060 0.1192973863 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
8 Hb_000309_070 0.1201259005 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
9 Hb_000620_050 0.1210339097 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
10 Hb_004957_050 0.121219241 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
11 Hb_149507_010 0.1212340249 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
12 Hb_090390_010 0.1228812553 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
13 Hb_002750_040 0.1237866261 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
14 Hb_026198_020 0.1242590606 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
15 Hb_002518_230 0.1276930602 - - -
16 Hb_091236_010 0.1294652991 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
17 Hb_002400_300 0.1297977241 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
18 Hb_002925_060 0.1309689787 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
19 Hb_002391_240 0.1313798791 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001410_080 0.1321321643 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_510 Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_002374_510--Hb_009122_010 Hb_003371_280 Hb_003371_280 Hb_002374_510--Hb_003371_280 Hb_113766_010 Hb_113766_010 Hb_002374_510--Hb_113766_010 Hb_001269_660 Hb_001269_660 Hb_002374_510--Hb_001269_660 Hb_002370_020 Hb_002370_020 Hb_002374_510--Hb_002370_020 Hb_012395_060 Hb_012395_060 Hb_002374_510--Hb_012395_060 Hb_001269_580 Hb_001269_580 Hb_009122_010--Hb_001269_580 Hb_001410_080 Hb_001410_080 Hb_009122_010--Hb_001410_080 Hb_008304_050 Hb_008304_050 Hb_009122_010--Hb_008304_050 Hb_002750_040 Hb_002750_040 Hb_009122_010--Hb_002750_040 Hb_009122_010--Hb_113766_010 Hb_000620_050 Hb_000620_050 Hb_003371_280--Hb_000620_050 Hb_184074_010 Hb_184074_010 Hb_003371_280--Hb_184074_010 Hb_003371_280--Hb_002370_020 Hb_000866_400 Hb_000866_400 Hb_003371_280--Hb_000866_400 Hb_011519_040 Hb_011519_040 Hb_003371_280--Hb_011519_040 Hb_000103_300 Hb_000103_300 Hb_113766_010--Hb_000103_300 Hb_002391_240 Hb_002391_240 Hb_113766_010--Hb_002391_240 Hb_026198_020 Hb_026198_020 Hb_113766_010--Hb_026198_020 Hb_000152_570 Hb_000152_570 Hb_113766_010--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_113766_010--Hb_002284_060 Hb_113766_010--Hb_002750_040 Hb_149507_010 Hb_149507_010 Hb_001269_660--Hb_149507_010 Hb_001269_660--Hb_012395_060 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_001277_010 Hb_001277_010 Hb_001269_660--Hb_001277_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_002370_020--Hb_000866_400 Hb_002370_020--Hb_149507_010 Hb_025623_010 Hb_025623_010 Hb_002370_020--Hb_025623_010 Hb_002370_020--Hb_001269_660 Hb_169077_030 Hb_169077_030 Hb_012395_060--Hb_169077_030 Hb_004804_010 Hb_004804_010 Hb_012395_060--Hb_004804_010 Hb_001534_140 Hb_001534_140 Hb_012395_060--Hb_001534_140 Hb_138585_010 Hb_138585_010 Hb_012395_060--Hb_138585_010 Hb_012395_060--Hb_000152_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102593 1.3885 3.93658 28.0049 0.013727 0.0296811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.23386 0.10513 0.0985301 6.75129 20.6218

CAGE analysis