Hb_002374_520

Information

Type -
Description -
Location Contig2374: 436973-438804
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20010g
description POPTRDRAFT_818526; early nodulin 8 precursor family protein
nr
ID XP_002307434.1
description early nodulin 8 precursor family protein [Populus trichocarpa]
swissprot
ID Q9FXE5
description Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1 PE=2 SV=1
trembl
ID B9H7E9
description Early nodulin 8 family protein OS=Populus trichocarpa GN=POPTR_0005s20010g PE=4 SV=1
Gene Ontology
ID GO:0016788
description esterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24921: 438086-438703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_520 0.0 - - early nodulin 8 precursor family protein [Populus trichocarpa]
2 Hb_000899_060 0.0954632119 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
3 Hb_037684_010 0.1015997276 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
4 Hb_002598_020 0.1066245425 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
5 Hb_032260_130 0.1069681723 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
6 Hb_007237_080 0.1229377649 - - amino acid transporter, putative [Ricinus communis]
7 Hb_000453_290 0.1246720351 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
8 Hb_026144_040 0.1247252591 - - -
9 Hb_000115_290 0.1262895609 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
10 Hb_010417_090 0.1265270131 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
11 Hb_014361_040 0.1293888075 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_002477_080 0.1319311454 - - hypothetical protein RCOM_0653450 [Ricinus communis]
13 Hb_000090_020 0.132629377 - - acyltransferase, putative [Ricinus communis]
14 Hb_002592_070 0.1361490518 - - hypothetical protein VITISV_020993 [Vitis vinifera]
15 Hb_103541_010 0.136783272 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
16 Hb_000245_100 0.1377178451 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
17 Hb_000162_070 0.1394975761 - - phospholipase C, putative [Ricinus communis]
18 Hb_000325_010 0.1406426123 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_002370_050 0.1447987663 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
20 Hb_002811_110 0.1479078069 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_520 Hb_002374_520 Hb_000899_060 Hb_000899_060 Hb_002374_520--Hb_000899_060 Hb_037684_010 Hb_037684_010 Hb_002374_520--Hb_037684_010 Hb_002598_020 Hb_002598_020 Hb_002374_520--Hb_002598_020 Hb_032260_130 Hb_032260_130 Hb_002374_520--Hb_032260_130 Hb_007237_080 Hb_007237_080 Hb_002374_520--Hb_007237_080 Hb_000453_290 Hb_000453_290 Hb_002374_520--Hb_000453_290 Hb_000899_060--Hb_037684_010 Hb_002477_080 Hb_002477_080 Hb_000899_060--Hb_002477_080 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_103541_010 Hb_103541_010 Hb_000899_060--Hb_103541_010 Hb_020817_030 Hb_020817_030 Hb_037684_010--Hb_020817_030 Hb_000245_100 Hb_000245_100 Hb_037684_010--Hb_000245_100 Hb_002053_170 Hb_002053_170 Hb_037684_010--Hb_002053_170 Hb_037684_010--Hb_002598_020 Hb_000537_090 Hb_000537_090 Hb_002598_020--Hb_000537_090 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_002598_020--Hb_000090_020 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_001318_230 Hb_001318_230 Hb_002598_020--Hb_001318_230 Hb_164117_010 Hb_164117_010 Hb_032260_130--Hb_164117_010 Hb_004893_010 Hb_004893_010 Hb_032260_130--Hb_004893_010 Hb_000115_290 Hb_000115_290 Hb_032260_130--Hb_000115_290 Hb_116194_010 Hb_116194_010 Hb_032260_130--Hb_116194_010 Hb_007632_130 Hb_007632_130 Hb_032260_130--Hb_007632_130 Hb_007237_080--Hb_026144_040 Hb_002370_050 Hb_002370_050 Hb_007237_080--Hb_002370_050 Hb_007237_080--Hb_000162_070 Hb_001269_400 Hb_001269_400 Hb_007237_080--Hb_001269_400 Hb_002811_110 Hb_002811_110 Hb_007237_080--Hb_002811_110 Hb_000571_060 Hb_000571_060 Hb_007237_080--Hb_000571_060 Hb_002592_070 Hb_002592_070 Hb_000453_290--Hb_002592_070 Hb_022693_090 Hb_022693_090 Hb_000453_290--Hb_022693_090 Hb_000468_050 Hb_000468_050 Hb_000453_290--Hb_000468_050 Hb_002000_100 Hb_002000_100 Hb_000453_290--Hb_002000_100 Hb_027405_010 Hb_027405_010 Hb_000453_290--Hb_027405_010 Hb_001360_020 Hb_001360_020 Hb_000453_290--Hb_001360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.465878 0.107934 1.11821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.398234 0.427302

CAGE analysis