Hb_002374_550

Information

Type -
Description -
Location Contig2374: 466704-467744
Sequence    

Annotation

kegg
ID rcu:RCOM_1061010
description pepsin A, putative
nr
ID XP_012069972.1
description PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID A0A067L5U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03396 PE=4 SV=1
Gene Ontology
ID GO:0009505
description aspartic proteinase nepenthesin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24923: 466482-467955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_550 0.0 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
2 Hb_005941_030 0.1580646737 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
3 Hb_000042_060 0.1605988427 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
4 Hb_007044_160 0.1649123007 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
5 Hb_003102_030 0.1657933686 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
6 Hb_000914_050 0.1702328651 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
7 Hb_014361_090 0.1720574139 - - acyl-CoA binding protein 3A [Vernicia fordii]
8 Hb_000094_190 0.1747100227 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
9 Hb_000071_160 0.1846448609 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
10 Hb_030565_050 0.1862234828 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
11 Hb_010812_110 0.1889965368 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_011828_010 0.1914657397 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
13 Hb_003175_090 0.1915171938 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
14 Hb_000330_020 0.1918430847 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_000056_010 0.1945768028 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
16 Hb_001855_020 0.1970943427 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
17 Hb_000844_030 0.1980525239 - - ent-kaurene oxidase, putative [Ricinus communis]
18 Hb_030312_010 0.1989832904 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004449_090 0.1998620717 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
20 Hb_012762_060 0.2037324732 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_550 Hb_002374_550 Hb_005941_030 Hb_005941_030 Hb_002374_550--Hb_005941_030 Hb_000042_060 Hb_000042_060 Hb_002374_550--Hb_000042_060 Hb_007044_160 Hb_007044_160 Hb_002374_550--Hb_007044_160 Hb_003102_030 Hb_003102_030 Hb_002374_550--Hb_003102_030 Hb_000914_050 Hb_000914_050 Hb_002374_550--Hb_000914_050 Hb_014361_090 Hb_014361_090 Hb_002374_550--Hb_014361_090 Hb_000071_160 Hb_000071_160 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_006422_020 Hb_006422_020 Hb_000042_060--Hb_006422_020 Hb_167775_010 Hb_167775_010 Hb_000042_060--Hb_167775_010 Hb_001269_520 Hb_001269_520 Hb_000042_060--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_000042_060--Hb_000251_050 Hb_000042_060--Hb_000071_160 Hb_007044_160--Hb_003102_030 Hb_007044_160--Hb_000914_050 Hb_007044_160--Hb_005941_030 Hb_007044_160--Hb_000071_160 Hb_001711_080 Hb_001711_080 Hb_007044_160--Hb_001711_080 Hb_003102_030--Hb_005941_030 Hb_003102_030--Hb_000914_050 Hb_003102_030--Hb_000071_160 Hb_000011_070 Hb_000011_070 Hb_003102_030--Hb_000011_070 Hb_002026_020 Hb_002026_020 Hb_000914_050--Hb_002026_020 Hb_000094_190 Hb_000094_190 Hb_000914_050--Hb_000094_190 Hb_000914_050--Hb_005941_030 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63787 18.0669 10.4958 37.2904 10.3059 4.83306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241071 0.341295 0 2.60529 17.582

CAGE analysis