Hb_002374_560

Information

Type -
Description -
Location Contig2374: 475378-478127
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15880g
description hypothetical protein
nr
ID XP_011035524.1
description PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
swissprot
ID F4JYJ3
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana GN=SFH11 PE=3 SV=1
trembl
ID A0A067L6Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03395 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24924: 475844-476674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_560 0.0 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
2 Hb_000001_160 0.2126627094 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
3 Hb_002326_060 0.2148345221 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
4 Hb_047661_010 0.2207648883 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_001159_210 0.2223234274 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
6 Hb_001621_160 0.2252574157 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_002518_300 0.228685145 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
8 Hb_000853_290 0.2298640706 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
9 Hb_003529_220 0.2395457246 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
10 Hb_005054_050 0.2426567558 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_001504_090 0.2428703237 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_168893_010 0.2490820658 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
13 Hb_134732_010 0.250689435 - - -
14 Hb_027255_010 0.2552987441 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
15 Hb_000038_150 0.2572821621 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
16 Hb_006745_020 0.2599349387 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
17 Hb_000035_310 0.2630492005 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
18 Hb_120662_010 0.2643738128 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
19 Hb_003243_020 0.2683094528 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
20 Hb_003320_030 0.2685293725 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002374_560 Hb_002374_560 Hb_000001_160 Hb_000001_160 Hb_002374_560--Hb_000001_160 Hb_002326_060 Hb_002326_060 Hb_002374_560--Hb_002326_060 Hb_047661_010 Hb_047661_010 Hb_002374_560--Hb_047661_010 Hb_001159_210 Hb_001159_210 Hb_002374_560--Hb_001159_210 Hb_001621_160 Hb_001621_160 Hb_002374_560--Hb_001621_160 Hb_002518_300 Hb_002518_300 Hb_002374_560--Hb_002518_300 Hb_003043_060 Hb_003043_060 Hb_000001_160--Hb_003043_060 Hb_003243_020 Hb_003243_020 Hb_000001_160--Hb_003243_020 Hb_030627_040 Hb_030627_040 Hb_000001_160--Hb_030627_040 Hb_012340_020 Hb_012340_020 Hb_000001_160--Hb_012340_020 Hb_000001_160--Hb_002518_300 Hb_000001_160--Hb_002326_060 Hb_002326_060--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_002326_060--Hb_134732_010 Hb_000176_060 Hb_000176_060 Hb_002326_060--Hb_000176_060 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_000038_150 Hb_000038_150 Hb_002326_060--Hb_000038_150 Hb_005989_010 Hb_005989_010 Hb_047661_010--Hb_005989_010 Hb_047661_010--Hb_001159_210 Hb_009973_020 Hb_009973_020 Hb_047661_010--Hb_009973_020 Hb_023323_010 Hb_023323_010 Hb_047661_010--Hb_023323_010 Hb_004460_020 Hb_004460_020 Hb_047661_010--Hb_004460_020 Hb_001159_210--Hb_000038_150 Hb_001159_210--Hb_134732_010 Hb_001159_210--Hb_004460_020 Hb_003320_030 Hb_003320_030 Hb_001159_210--Hb_003320_030 Hb_005054_050 Hb_005054_050 Hb_001621_160--Hb_005054_050 Hb_001504_090 Hb_001504_090 Hb_001621_160--Hb_001504_090 Hb_020156_060 Hb_020156_060 Hb_001621_160--Hb_020156_060 Hb_000421_130 Hb_000421_130 Hb_001621_160--Hb_000421_130 Hb_005565_080 Hb_005565_080 Hb_001621_160--Hb_005565_080 Hb_002518_300--Hb_003243_020 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_099698_010 Hb_099698_010 Hb_002518_300--Hb_099698_010 Hb_008406_130 Hb_008406_130 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92701 0.694849 0.373801 1.67484 12.3622 5.66852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0549639 0.153173 0.917487

CAGE analysis