Hb_002375_060

Information

Type -
Description -
Location Contig2375: 88108-93209
Sequence    

Annotation

kegg
ID cit:102616298
description uncharacterized LOC102616298
nr
ID XP_012065058.1
description PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID A0A067FLE0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037907mg PE=4 SV=1
Gene Ontology
ID GO:0008270
description membrane associated ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24947: 88039-93167 , PASA_asmbl_24948: 88579-93195 , PASA_asmbl_24949: 91141-91375
cDNA
(Sanger)
(ID:Location)		 004_L15.ab1: 88579-93195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_060 0.0 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
2 Hb_023386_050 0.1190743229 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000366_050 0.1366855674 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
4 Hb_164926_050 0.1368244112 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
5 Hb_029576_010 0.1397186753 - - PREDICTED: B-cell receptor-associated protein 31-like [Glycine max]
6 Hb_000836_320 0.1456111715 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_008021_010 0.1471060851 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
8 Hb_005375_070 0.1498396416 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
9 Hb_071072_010 0.1517606598 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_007574_050 0.1523243735 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
11 Hb_000329_790 0.1551128114 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
12 Hb_046109_010 0.1553218975 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_000069_430 0.1559652382 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
14 Hb_012308_050 0.1565065799 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
15 Hb_000402_030 0.1581204859 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
16 Hb_005539_100 0.1597568429 - - nucleoside transporter, putative [Ricinus communis]
17 Hb_005000_050 0.1604947441 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
18 Hb_148346_010 0.1605240484 - - -
19 Hb_000100_210 0.1607086549 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
20 Hb_001898_010 0.1607874662 - - hypothetical protein JCGZ_00222 [Jatropha curcas]

Gene co-expression network

sample Hb_002375_060 Hb_002375_060 Hb_023386_050 Hb_023386_050 Hb_002375_060--Hb_023386_050 Hb_000366_050 Hb_000366_050 Hb_002375_060--Hb_000366_050 Hb_164926_050 Hb_164926_050 Hb_002375_060--Hb_164926_050 Hb_029576_010 Hb_029576_010 Hb_002375_060--Hb_029576_010 Hb_000836_320 Hb_000836_320 Hb_002375_060--Hb_000836_320 Hb_008021_010 Hb_008021_010 Hb_002375_060--Hb_008021_010 Hb_001123_170 Hb_001123_170 Hb_023386_050--Hb_001123_170 Hb_000100_210 Hb_000100_210 Hb_023386_050--Hb_000100_210 Hb_003656_170 Hb_003656_170 Hb_023386_050--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_023386_050--Hb_002324_050 Hb_005000_050 Hb_005000_050 Hb_023386_050--Hb_005000_050 Hb_011381_070 Hb_011381_070 Hb_000366_050--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_000366_050--Hb_001158_120 Hb_002609_290 Hb_002609_290 Hb_000366_050--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_001294_040 Hb_001294_040 Hb_000366_050--Hb_001294_040 Hb_033053_010 Hb_033053_010 Hb_164926_050--Hb_033053_010 Hb_000069_430 Hb_000069_430 Hb_164926_050--Hb_000069_430 Hb_002078_250 Hb_002078_250 Hb_164926_050--Hb_002078_250 Hb_007574_050 Hb_007574_050 Hb_164926_050--Hb_007574_050 Hb_164926_050--Hb_005000_050 Hb_002235_370 Hb_002235_370 Hb_164926_050--Hb_002235_370 Hb_029576_010--Hb_000329_790 Hb_003599_020 Hb_003599_020 Hb_029576_010--Hb_003599_020 Hb_083493_010 Hb_083493_010 Hb_029576_010--Hb_083493_010 Hb_029576_010--Hb_008021_010 Hb_029576_010--Hb_000366_050 Hb_177215_020 Hb_177215_020 Hb_000836_320--Hb_177215_020 Hb_000054_140 Hb_000054_140 Hb_000836_320--Hb_000054_140 Hb_001198_160 Hb_001198_160 Hb_000836_320--Hb_001198_160 Hb_001619_020 Hb_001619_020 Hb_000836_320--Hb_001619_020 Hb_000985_140 Hb_000985_140 Hb_000836_320--Hb_000985_140 Hb_005375_070 Hb_005375_070 Hb_008021_010--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_008021_010--Hb_001898_010 Hb_002849_110 Hb_002849_110 Hb_008021_010--Hb_002849_110 Hb_008021_010--Hb_023386_050 Hb_172676_010 Hb_172676_010 Hb_008021_010--Hb_172676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.588144 15.5318 12.7517 11.3704 0.681295 2.90806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142949 0.0374779 0.207606 5.81087 4.00065

CAGE analysis