Hb_002375_080

Information

Type -
Description -
Location Contig2375: 112276-112938
Sequence    

Annotation

kegg
ID rcu:RCOM_0547710
description hypothetical protein
nr
ID XP_002530575.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SX56
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0547710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007007_090 0.0820928781 - - phospholipase d beta, putative [Ricinus communis]
3 Hb_001677_120 0.0875852021 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_007102_010 0.0884552595 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
5 Hb_004837_110 0.1014586581 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
6 Hb_001821_050 0.1033606702 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
7 Hb_002097_130 0.1118265546 - - tonoplast intrinsic protein [Hevea brasiliensis]
8 Hb_175670_010 0.1127533933 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_006573_280 0.1156923193 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
10 Hb_028928_020 0.1179681777 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
11 Hb_004724_300 0.1202143005 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
12 Hb_005271_180 0.1210663946 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
13 Hb_005074_010 0.1220538637 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
14 Hb_002010_080 0.1224523969 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
15 Hb_001248_170 0.1244800155 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_001013_050 0.1245472177 - - unnamed protein product [Coffea canephora]
17 Hb_000589_330 0.1250795065 - - kinase, putative [Ricinus communis]
18 Hb_000313_100 0.1259945613 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
19 Hb_033312_090 0.1261239308 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
20 Hb_001046_040 0.1261425619 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002375_080 Hb_002375_080 Hb_007007_090 Hb_007007_090 Hb_002375_080--Hb_007007_090 Hb_001677_120 Hb_001677_120 Hb_002375_080--Hb_001677_120 Hb_007102_010 Hb_007102_010 Hb_002375_080--Hb_007102_010 Hb_004837_110 Hb_004837_110 Hb_002375_080--Hb_004837_110 Hb_001821_050 Hb_001821_050 Hb_002375_080--Hb_001821_050 Hb_002097_130 Hb_002097_130 Hb_002375_080--Hb_002097_130 Hb_001248_170 Hb_001248_170 Hb_007007_090--Hb_001248_170 Hb_007007_090--Hb_001677_120 Hb_000589_330 Hb_000589_330 Hb_007007_090--Hb_000589_330 Hb_006573_280 Hb_006573_280 Hb_007007_090--Hb_006573_280 Hb_003562_040 Hb_003562_040 Hb_007007_090--Hb_003562_040 Hb_001677_120--Hb_001821_050 Hb_001677_120--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_001677_120--Hb_004724_300 Hb_004945_050 Hb_004945_050 Hb_001677_120--Hb_004945_050 Hb_007102_010--Hb_004837_110 Hb_007102_010--Hb_001821_050 Hb_002890_320 Hb_002890_320 Hb_007102_010--Hb_002890_320 Hb_007102_010--Hb_004724_300 Hb_004112_050 Hb_004112_050 Hb_007102_010--Hb_004112_050 Hb_004837_110--Hb_002890_320 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_001821_050--Hb_004724_300 Hb_134022_010 Hb_134022_010 Hb_001821_050--Hb_134022_010 Hb_002097_130--Hb_028928_020 Hb_033187_020 Hb_033187_020 Hb_002097_130--Hb_033187_020 Hb_002097_130--Hb_000589_330 Hb_003849_200 Hb_003849_200 Hb_002097_130--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_002097_130--Hb_003435_040 Hb_001013_050 Hb_001013_050 Hb_002097_130--Hb_001013_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0377501 2.49846 0.906475 1.28397 0.0379583 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.420006 1.07853

CAGE analysis