Hb_002375_090

Information

Type -
Description -
Location Contig2375: 119592-120687
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24953: 120050-120375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_090 0.0 - - -
2 Hb_000227_230 0.0744484767 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
3 Hb_002471_150 0.0868450127 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
4 Hb_003734_140 0.0869208485 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002925_030 0.0874465146 - - 40S ribosomal protein S16B [Hevea brasiliensis]
6 Hb_089839_020 0.0917564121 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
7 Hb_003398_120 0.09201386 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_009265_090 0.0925949282 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
9 Hb_002311_350 0.0948757596 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
10 Hb_000264_090 0.0962056179 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_005618_140 0.096358856 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
12 Hb_000380_190 0.0971087474 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
13 Hb_001998_050 0.1002085473 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
14 Hb_002713_070 0.1023747027 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
15 Hb_000189_270 0.1052562775 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
16 Hb_000580_080 0.1063093474 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
17 Hb_154826_010 0.1072333625 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_000526_040 0.1074618864 - - 60S ribosomal protein L6, putative [Ricinus communis]
19 Hb_005511_160 0.108924852 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
20 Hb_011311_010 0.1095533801 - - 60S ribosomal protein L27C [Hevea brasiliensis]

Gene co-expression network

sample Hb_002375_090 Hb_002375_090 Hb_000227_230 Hb_000227_230 Hb_002375_090--Hb_000227_230 Hb_002471_150 Hb_002471_150 Hb_002375_090--Hb_002471_150 Hb_003734_140 Hb_003734_140 Hb_002375_090--Hb_003734_140 Hb_002925_030 Hb_002925_030 Hb_002375_090--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_002375_090--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_002375_090--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_000227_230--Hb_002925_030 Hb_000227_230--Hb_089839_020 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_154826_010 Hb_154826_010 Hb_002471_150--Hb_154826_010 Hb_009793_010 Hb_009793_010 Hb_002471_150--Hb_009793_010 Hb_172632_090 Hb_172632_090 Hb_002471_150--Hb_172632_090 Hb_002043_130 Hb_002043_130 Hb_002471_150--Hb_002043_130 Hb_002226_070 Hb_002226_070 Hb_002471_150--Hb_002226_070 Hb_003734_140--Hb_089839_020 Hb_003734_140--Hb_002925_030 Hb_002713_070 Hb_002713_070 Hb_003734_140--Hb_002713_070 Hb_003734_140--Hb_000227_230 Hb_003734_140--Hb_001505_020 Hb_004375_100 Hb_004375_100 Hb_003734_140--Hb_004375_100 Hb_002925_030--Hb_003398_120 Hb_002925_030--Hb_001998_050 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_089839_020--Hb_002713_070 Hb_000580_080 Hb_000580_080 Hb_089839_020--Hb_000580_080 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_003398_120--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83954 2.42465 1.60566 1.62257 4.22296 5.34816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50406 12.9051 4.94476 3.89098 0.974526

CAGE analysis