Hb_002375_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2375: 141747-145458
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022038mg
description hypothetical protein
nr
ID CDP10855.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A068UQN3
description Coffea canephora DH200=94 genomic scaffold, scaffold_48 OS=Coffea canephora GN=GSCOC_T00031774001 PE=4 SV=1
Gene Ontology
ID GO:0000166
description leucine-rich repeat containing-like protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24955: 141441-141921 , PASA_asmbl_24956: 141964-142576 , PASA_asmbl_24957: 141964-142576 , PASA_asmbl_24959: 143207-143521 , PASA_asmbl_24961: 143852-144045 , PASA_asmbl_24963: 144785-145510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_110 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
2 Hb_000176_130 0.083512094 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
3 Hb_061878_010 0.0908054459 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
4 Hb_054885_020 0.0930932616 - - -
5 Hb_009367_080 0.0948834264 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
6 Hb_001989_050 0.0988331063 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
7 Hb_028472_010 0.1033223332 - - glycosyltransferase, putative [Ricinus communis]
8 Hb_000184_150 0.1068384996 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
9 Hb_000832_220 0.1070438191 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
10 Hb_027136_010 0.1083527847 - - hypothetical protein L484_010426 [Morus notabilis]
11 Hb_003939_040 0.1086564792 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
12 Hb_007426_130 0.1087347488 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_000635_200 0.1093730076 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
14 Hb_086287_010 0.109534029 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
15 Hb_005260_040 0.1098863458 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
16 Hb_000120_660 0.1105334874 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
17 Hb_008103_020 0.1126286365 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
18 Hb_011671_230 0.1127968724 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004629_010 0.1132633293 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
20 Hb_002081_120 0.1156442784 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_002375_110 Hb_002375_110 Hb_000176_130 Hb_000176_130 Hb_002375_110--Hb_000176_130 Hb_061878_010 Hb_061878_010 Hb_002375_110--Hb_061878_010 Hb_054885_020 Hb_054885_020 Hb_002375_110--Hb_054885_020 Hb_009367_080 Hb_009367_080 Hb_002375_110--Hb_009367_080 Hb_001989_050 Hb_001989_050 Hb_002375_110--Hb_001989_050 Hb_028472_010 Hb_028472_010 Hb_002375_110--Hb_028472_010 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_001235_230 Hb_001235_230 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_000176_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_140049_080 Hb_140049_080 Hb_061878_010--Hb_140049_080 Hb_006355_090 Hb_006355_090 Hb_061878_010--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_000037_220 Hb_000037_220 Hb_061878_010--Hb_000037_220 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_000537_140 Hb_000537_140 Hb_054885_020--Hb_000537_140 Hb_009367_080--Hb_028472_010 Hb_009367_080--Hb_000037_220 Hb_009367_080--Hb_061878_010 Hb_005563_060 Hb_005563_060 Hb_009367_080--Hb_005563_060 Hb_000256_020 Hb_000256_020 Hb_009367_080--Hb_000256_020 Hb_006573_170 Hb_006573_170 Hb_001989_050--Hb_006573_170 Hb_001989_050--Hb_000176_130 Hb_001492_040 Hb_001492_040 Hb_001989_050--Hb_001492_040 Hb_000086_690 Hb_000086_690 Hb_001989_050--Hb_000086_690 Hb_005214_150 Hb_005214_150 Hb_001989_050--Hb_005214_150 Hb_000836_020 Hb_000836_020 Hb_001989_050--Hb_000836_020 Hb_028472_010--Hb_005563_060 Hb_028472_010--Hb_000836_020 Hb_028472_010--Hb_000037_220 Hb_011242_060 Hb_011242_060 Hb_028472_010--Hb_011242_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.36413 7.02923 2.63469 4.54569 3.73513 6.1566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07512 0.65694 2.07961 4.56052 2.9372

CAGE analysis