Hb_002376_020

Information

Type -
Description -
Location Contig2376: 7264-7902
Sequence    

Annotation

kegg
ID cic:CICLE_v10009194mg
description hypothetical protein
nr
ID ADN95878.1
description lectin, partial [Lathyrus palustris]
swissprot
ID -
description -
trembl
ID M0X176
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0016772
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002376_020 0.0 - - lectin, partial [Lathyrus palustris]
2 Hb_005550_060 0.0366387844 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
3 Hb_008252_010 0.0371547795 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
4 Hb_006485_020 0.0396811083 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
5 Hb_005170_050 0.0508741944 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
6 Hb_000155_280 0.0527848271 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
7 Hb_000005_390 0.0571799447 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
8 Hb_162008_020 0.0589829277 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
9 Hb_000544_150 0.059397876 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
10 Hb_017959_020 0.0595911439 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
11 Hb_001680_060 0.0644015734 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002026_040 0.0662344533 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
13 Hb_008642_020 0.0686603699 - - sterol desaturase, putative [Ricinus communis]
14 Hb_162008_040 0.0693511516 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
15 Hb_013849_010 0.069509814 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
16 Hb_000212_170 0.0732519067 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
17 Hb_121680_010 0.078005758 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
18 Hb_004881_040 0.0799965726 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
19 Hb_014109_030 0.0826182918 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
20 Hb_000844_120 0.0827877406 - - hypothetical protein JCGZ_09179 [Jatropha curcas]

Gene co-expression network

sample Hb_002376_020 Hb_002376_020 Hb_005550_060 Hb_005550_060 Hb_002376_020--Hb_005550_060 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_006485_020 Hb_006485_020 Hb_002376_020--Hb_006485_020 Hb_005170_050 Hb_005170_050 Hb_002376_020--Hb_005170_050 Hb_000155_280 Hb_000155_280 Hb_002376_020--Hb_000155_280 Hb_000005_390 Hb_000005_390 Hb_002376_020--Hb_000005_390 Hb_000544_150 Hb_000544_150 Hb_005550_060--Hb_000544_150 Hb_005550_060--Hb_000005_390 Hb_008642_020 Hb_008642_020 Hb_005550_060--Hb_008642_020 Hb_005550_060--Hb_005170_050 Hb_005550_060--Hb_006485_020 Hb_162008_020 Hb_162008_020 Hb_008252_010--Hb_162008_020 Hb_121680_010 Hb_121680_010 Hb_008252_010--Hb_121680_010 Hb_162008_040 Hb_162008_040 Hb_008252_010--Hb_162008_040 Hb_008252_010--Hb_005550_060 Hb_000212_170 Hb_000212_170 Hb_008252_010--Hb_000212_170 Hb_006485_020--Hb_000155_280 Hb_017959_020 Hb_017959_020 Hb_006485_020--Hb_017959_020 Hb_002026_040 Hb_002026_040 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_005170_050 Hb_006485_020--Hb_000005_390 Hb_005170_050--Hb_008642_020 Hb_005170_050--Hb_017959_020 Hb_005170_050--Hb_000005_390 Hb_000155_280--Hb_002026_040 Hb_000155_280--Hb_017959_020 Hb_013849_010 Hb_013849_010 Hb_000155_280--Hb_013849_010 Hb_000155_280--Hb_005170_050 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_008642_020 Hb_000005_390--Hb_000544_150 Hb_000563_110 Hb_000563_110 Hb_000005_390--Hb_000563_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 28.3566 2.51227 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.424189

CAGE analysis