Hb_002376_030

Information

Type -
Description -
Location Contig2376: 22534-30666
Sequence    

Annotation

kegg
ID rcu:RCOM_0819040
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.30)
nr
ID XP_002518352.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID B9RX83
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0819040 PE=3 SV=1
Gene Ontology
ID GO:0000166
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002376_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_006919_010 0.098228149 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
3 Hb_002374_110 0.1168934577 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
4 Hb_013652_010 0.1183360469 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_007483_030 0.1253354117 - - -
6 Hb_000407_110 0.1266630993 - - ripening-induced ACC oxidase [Carica papaya]
7 Hb_003581_240 0.1272265776 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_027288_010 0.1362654133 - - mutt domain protein, putative [Ricinus communis]
9 Hb_003166_040 0.1367881126 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
10 Hb_002272_160 0.1433641299 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_127743_030 0.1462028866 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001609_080 0.1468392692 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
13 Hb_058526_010 0.1514469796 - - -
14 Hb_000462_020 0.1545750455 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_002027_310 0.1554725955 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004586_080 0.156160436 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
17 Hb_007747_030 0.1573001587 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
18 Hb_005653_100 0.1628244642 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
19 Hb_008080_040 0.1644812841 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
20 Hb_183700_010 0.1647465674 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002376_030 Hb_002376_030 Hb_006919_010 Hb_006919_010 Hb_002376_030--Hb_006919_010 Hb_002374_110 Hb_002374_110 Hb_002376_030--Hb_002374_110 Hb_013652_010 Hb_013652_010 Hb_002376_030--Hb_013652_010 Hb_007483_030 Hb_007483_030 Hb_002376_030--Hb_007483_030 Hb_000407_110 Hb_000407_110 Hb_002376_030--Hb_000407_110 Hb_003581_240 Hb_003581_240 Hb_002376_030--Hb_003581_240 Hb_006919_010--Hb_000407_110 Hb_001609_080 Hb_001609_080 Hb_006919_010--Hb_001609_080 Hb_006919_010--Hb_002374_110 Hb_006919_010--Hb_007483_030 Hb_003166_040 Hb_003166_040 Hb_006919_010--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_002374_110--Hb_127743_030 Hb_002374_110--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_002374_110--Hb_058526_010 Hb_002374_110--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_002374_110--Hb_027288_010 Hb_013652_010--Hb_002374_110 Hb_013652_010--Hb_006919_010 Hb_013652_010--Hb_000407_110 Hb_013652_010--Hb_127743_030 Hb_013652_010--Hb_003166_040 Hb_007483_030--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_007483_030--Hb_007747_030 Hb_003052_070 Hb_003052_070 Hb_007483_030--Hb_003052_070 Hb_007483_030--Hb_003166_040 Hb_007483_030--Hb_000407_110 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_000407_110--Hb_001609_080 Hb_008080_040 Hb_008080_040 Hb_000407_110--Hb_008080_040 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_004586_080 Hb_004586_080 Hb_000407_110--Hb_004586_080 Hb_183700_010 Hb_183700_010 Hb_003581_240--Hb_183700_010 Hb_000813_120 Hb_000813_120 Hb_003581_240--Hb_000813_120 Hb_003581_240--Hb_007483_030 Hb_003581_240--Hb_027288_010 Hb_003581_240--Hb_006919_010 Hb_014113_010 Hb_014113_010 Hb_003581_240--Hb_014113_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.125597 0.0740804 0.0220368 0.00482717 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00919886 0 0.437354 0

CAGE analysis