Hb_002377_010

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig2377: 3054-12987
Sequence    

Annotation

kegg
ID tcc:TCM_014441
description JHL10I11.10 protein, putative isoform 1
nr
ID XP_012093039.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
swissprot
ID O50055
description Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1
trembl
ID E6NU54
description JHL10I11.10 protein OS=Jatropha curcas GN=JHL10I11.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002377_010 0.0 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
2 Hb_000343_080 0.0901549179 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002391_010 0.1183047161 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
4 Hb_001926_080 0.1190412555 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
5 Hb_000485_100 0.1197771812 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
6 Hb_001534_130 0.1202077264 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
7 Hb_006895_010 0.1221636361 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
8 Hb_000224_190 0.1227044525 - - zinc finger protein, putative [Ricinus communis]
9 Hb_095744_010 0.124629966 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
10 Hb_001863_470 0.1252065302 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
11 Hb_024723_010 0.1254795491 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
12 Hb_000111_490 0.1288850151 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004459_010 0.1302874221 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
14 Hb_001345_050 0.1314097279 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
15 Hb_072771_010 0.1314150101 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
16 Hb_002326_010 0.1319485535 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
17 Hb_000483_320 0.1334408218 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
18 Hb_061256_020 0.1359766991 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
19 Hb_000421_040 0.1379891951 - - Peptide transporter, putative [Ricinus communis]
20 Hb_001981_050 0.1385692079 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002377_010 Hb_002377_010 Hb_000343_080 Hb_000343_080 Hb_002377_010--Hb_000343_080 Hb_002391_010 Hb_002391_010 Hb_002377_010--Hb_002391_010 Hb_001926_080 Hb_001926_080 Hb_002377_010--Hb_001926_080 Hb_000485_100 Hb_000485_100 Hb_002377_010--Hb_000485_100 Hb_001534_130 Hb_001534_130 Hb_002377_010--Hb_001534_130 Hb_006895_010 Hb_006895_010 Hb_002377_010--Hb_006895_010 Hb_001593_040 Hb_001593_040 Hb_000343_080--Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_000343_080--Hb_064445_020 Hb_002326_010 Hb_002326_010 Hb_000343_080--Hb_002326_010 Hb_001863_470 Hb_001863_470 Hb_000343_080--Hb_001863_470 Hb_008453_050 Hb_008453_050 Hb_000343_080--Hb_008453_050 Hb_154038_010 Hb_154038_010 Hb_000343_080--Hb_154038_010 Hb_002391_010--Hb_001926_080 Hb_002391_010--Hb_000485_100 Hb_000224_190 Hb_000224_190 Hb_002391_010--Hb_000224_190 Hb_024723_010 Hb_024723_010 Hb_002391_010--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_002391_010--Hb_000111_490 Hb_001345_050 Hb_001345_050 Hb_002391_010--Hb_001345_050 Hb_001926_080--Hb_000224_190 Hb_001926_080--Hb_000485_100 Hb_072771_010 Hb_072771_010 Hb_001926_080--Hb_072771_010 Hb_001926_080--Hb_001345_050 Hb_001926_080--Hb_002326_010 Hb_000485_100--Hb_024723_010 Hb_000485_100--Hb_000111_490 Hb_000485_100--Hb_000224_190 Hb_000485_100--Hb_006895_010 Hb_005833_010 Hb_005833_010 Hb_001534_130--Hb_005833_010 Hb_126714_010 Hb_126714_010 Hb_001534_130--Hb_126714_010 Hb_006588_140 Hb_006588_140 Hb_001534_130--Hb_006588_140 Hb_000358_260 Hb_000358_260 Hb_001534_130--Hb_000358_260 Hb_010577_020 Hb_010577_020 Hb_001534_130--Hb_010577_020 Hb_056506_040 Hb_056506_040 Hb_001534_130--Hb_056506_040 Hb_001289_040 Hb_001289_040 Hb_006895_010--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_006895_010--Hb_094439_040 Hb_000707_090 Hb_000707_090 Hb_006895_010--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_006895_010--Hb_000557_080 Hb_006895_010--Hb_002391_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0960885 0.227945 0 0.0158137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.231237

CAGE analysis