Hb_002379_060

Information

Type -
Description -
Location Contig2379: 75207-79702
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13580g
description POPTRDRAFT_766201; hypothetical protein
nr
ID XP_012072333.1
description PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
swissprot
ID Q8L612
description MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1
trembl
ID A0A067KT43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04781 PE=4 SV=1
Gene Ontology
ID GO:0015824
description macpf domain-containing protein at1g14780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24981: 75694-78234 , PASA_asmbl_24982: 78755-79160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002379_060 0.0 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
2 Hb_000087_120 0.0605682801 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_019278_010 0.1034817284 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
4 Hb_004943_010 0.1113628313 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_001300_140 0.1135091779 - - -
6 Hb_000836_260 0.1154529047 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_170023_010 0.1162339793 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
8 Hb_000215_130 0.1223285946 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
9 Hb_000847_120 0.1234387546 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
10 Hb_004324_320 0.1281814988 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_000567_150 0.1302986997 - - cysteine protease, putative [Ricinus communis]
12 Hb_004709_030 0.1305439239 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
13 Hb_001186_120 0.136269403 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
14 Hb_005333_210 0.1385690006 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
15 Hb_000751_070 0.1412173151 - - -
16 Hb_000776_020 0.1426411467 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
17 Hb_000457_130 0.1456334624 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
18 Hb_007850_110 0.1465458285 - - MADS-box transcription factor 3 [Hevea brasiliensis]
19 Hb_011440_010 0.1472351123 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
20 Hb_017098_050 0.1476111144 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]

Gene co-expression network

sample Hb_002379_060 Hb_002379_060 Hb_000087_120 Hb_000087_120 Hb_002379_060--Hb_000087_120 Hb_019278_010 Hb_019278_010 Hb_002379_060--Hb_019278_010 Hb_004943_010 Hb_004943_010 Hb_002379_060--Hb_004943_010 Hb_001300_140 Hb_001300_140 Hb_002379_060--Hb_001300_140 Hb_000836_260 Hb_000836_260 Hb_002379_060--Hb_000836_260 Hb_170023_010 Hb_170023_010 Hb_002379_060--Hb_170023_010 Hb_000087_120--Hb_019278_010 Hb_000087_120--Hb_170023_010 Hb_004709_030 Hb_004709_030 Hb_000087_120--Hb_004709_030 Hb_004324_320 Hb_004324_320 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_019278_010--Hb_170023_010 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_019278_010--Hb_004709_030 Hb_000365_440 Hb_000365_440 Hb_019278_010--Hb_000365_440 Hb_168319_060 Hb_168319_060 Hb_004943_010--Hb_168319_060 Hb_004943_010--Hb_000836_260 Hb_007850_110 Hb_007850_110 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_000258_210 Hb_000258_210 Hb_004943_010--Hb_000258_210 Hb_001109_130 Hb_001109_130 Hb_004943_010--Hb_001109_130 Hb_011440_010 Hb_011440_010 Hb_001300_140--Hb_011440_010 Hb_009150_060 Hb_009150_060 Hb_001300_140--Hb_009150_060 Hb_001300_140--Hb_000836_260 Hb_000753_180 Hb_000753_180 Hb_001300_140--Hb_000753_180 Hb_005333_210 Hb_005333_210 Hb_001300_140--Hb_005333_210 Hb_000844_090 Hb_000844_090 Hb_001300_140--Hb_000844_090 Hb_000847_120 Hb_000847_120 Hb_000836_260--Hb_000847_120 Hb_000836_260--Hb_009150_060 Hb_008376_020 Hb_008376_020 Hb_000836_260--Hb_008376_020 Hb_000836_260--Hb_000753_180 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_000365_440 Hb_000880_040 Hb_000880_040 Hb_170023_010--Hb_000880_040 Hb_001244_070 Hb_001244_070 Hb_170023_010--Hb_001244_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.23985 1.07918 0.603868 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0235616 0 0 1.88146 1.60446

CAGE analysis