Hb_002383_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2383: 3494-5776
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_012065700.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067L8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002383_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_000005_150 0.0010218926 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
3 Hb_077165_010 0.0018879512 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012758_020 0.0043244402 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_005858_010 0.0062501831 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
6 Hb_011515_020 0.0086625923 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
7 Hb_001021_190 0.0113337222 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_000245_010 0.0128098759 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
9 Hb_003784_030 0.0141646412 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001414_070 0.0181865688 - - Zinc finger protein GIS2 [Medicago truncatula]
11 Hb_007138_020 0.0183639222 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
12 Hb_014776_010 0.0193130926 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
13 Hb_088508_010 0.0198497837 - - cytochrome P450, putative [Ricinus communis]
14 Hb_014223_030 0.0206189666 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
15 Hb_002471_030 0.0210459904 - - PREDICTED: cyclin-J18 [Jatropha curcas]
16 Hb_168451_010 0.0221410107 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
17 Hb_053224_010 0.0224647748 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
18 Hb_000018_080 0.0240545688 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
19 Hb_007292_040 0.026171913 - - Plastid developmental protein DAG [Theobroma cacao]
20 Hb_000762_100 0.0266015017 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]

Gene co-expression network

sample Hb_002383_010 Hb_002383_010 Hb_000005_150 Hb_000005_150 Hb_002383_010--Hb_000005_150 Hb_077165_010 Hb_077165_010 Hb_002383_010--Hb_077165_010 Hb_012758_020 Hb_012758_020 Hb_002383_010--Hb_012758_020 Hb_005858_010 Hb_005858_010 Hb_002383_010--Hb_005858_010 Hb_011515_020 Hb_011515_020 Hb_002383_010--Hb_011515_020 Hb_001021_190 Hb_001021_190 Hb_002383_010--Hb_001021_190 Hb_000005_150--Hb_077165_010 Hb_000005_150--Hb_012758_020 Hb_000005_150--Hb_005858_010 Hb_000005_150--Hb_011515_020 Hb_000005_150--Hb_001021_190 Hb_077165_010--Hb_012758_020 Hb_077165_010--Hb_011515_020 Hb_077165_010--Hb_005858_010 Hb_077165_010--Hb_001021_190 Hb_012758_020--Hb_005858_010 Hb_000245_010 Hb_000245_010 Hb_012758_020--Hb_000245_010 Hb_012758_020--Hb_011515_020 Hb_005858_010--Hb_000245_010 Hb_001414_070 Hb_001414_070 Hb_005858_010--Hb_001414_070 Hb_011515_020--Hb_001021_190 Hb_003784_030 Hb_003784_030 Hb_011515_020--Hb_003784_030 Hb_001021_190--Hb_003784_030 Hb_168451_010 Hb_168451_010 Hb_001021_190--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_001021_190--Hb_053224_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0258136 0.0438001 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis