Hb_002387_010

Information

Type -
Description -
Location Contig2387: 11497-14324
Sequence    

Annotation

kegg
ID rcu:RCOM_0560060
description hypothetical protein
nr
ID XP_012078345.1
description PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
swissprot
ID Q94AQ9
description Protein STAY-GREEN LIKE, chloroplastic OS=Arabidopsis thaliana GN=SGRL PE=2 SV=1
trembl
ID A0A067K9V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12189 PE=4 SV=1
Gene Ontology
ID GO:0009658
description protein stay-green chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25003: 11525-14177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_010 0.0 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
2 Hb_002805_280 0.0462355998 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
3 Hb_004607_110 0.0706435551 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
4 Hb_008195_090 0.0741963777 - - conserved hypothetical protein [Ricinus communis]
5 Hb_044478_010 0.0776139785 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
6 Hb_029991_010 0.0795571643 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
7 Hb_003913_120 0.0809577642 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
8 Hb_002042_210 0.0825353462 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
9 Hb_003090_240 0.0840511788 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
10 Hb_131466_010 0.0854815894 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
11 Hb_033187_010 0.090077929 - - epoxide hydrolase, putative [Ricinus communis]
12 Hb_000139_360 0.0911206374 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
13 Hb_028491_010 0.0921862926 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
14 Hb_000696_060 0.0923600392 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000803_080 0.0935715856 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_006291_050 0.0965688696 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_003151_020 0.0976145083 - - Ankyrin repeat family protein, putative [Theobroma cacao]
18 Hb_000099_120 0.0990754351 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_004338_050 0.0993365606 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
20 Hb_004563_010 0.1025364664 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002387_010 Hb_002387_010 Hb_002805_280 Hb_002805_280 Hb_002387_010--Hb_002805_280 Hb_004607_110 Hb_004607_110 Hb_002387_010--Hb_004607_110 Hb_008195_090 Hb_008195_090 Hb_002387_010--Hb_008195_090 Hb_044478_010 Hb_044478_010 Hb_002387_010--Hb_044478_010 Hb_029991_010 Hb_029991_010 Hb_002387_010--Hb_029991_010 Hb_003913_120 Hb_003913_120 Hb_002387_010--Hb_003913_120 Hb_002805_280--Hb_008195_090 Hb_002042_210 Hb_002042_210 Hb_002805_280--Hb_002042_210 Hb_003090_240 Hb_003090_240 Hb_002805_280--Hb_003090_240 Hb_002805_280--Hb_004607_110 Hb_002805_280--Hb_029991_010 Hb_028491_010 Hb_028491_010 Hb_004607_110--Hb_028491_010 Hb_004607_110--Hb_029991_010 Hb_001141_100 Hb_001141_100 Hb_004607_110--Hb_001141_100 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_001735_040 Hb_001735_040 Hb_004607_110--Hb_001735_040 Hb_000803_080 Hb_000803_080 Hb_004607_110--Hb_000803_080 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_008195_090--Hb_029991_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_044478_010--Hb_002042_210 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_005111_040 Hb_005111_040 Hb_044478_010--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_044478_010--Hb_001999_230 Hb_029991_010--Hb_131466_010 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_029991_010--Hb_028491_010 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050 Hb_003913_120--Hb_000803_080 Hb_004837_010 Hb_004837_010 Hb_003913_120--Hb_004837_010 Hb_003734_070 Hb_003734_070 Hb_003913_120--Hb_003734_070 Hb_003913_120--Hb_004607_110 Hb_004807_010 Hb_004807_010 Hb_003913_120--Hb_004807_010 Hb_000418_130 Hb_000418_130 Hb_003913_120--Hb_000418_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.31627 7.90032 9.01865 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179065 0.21127 0 0.324946 19.9435

CAGE analysis