Hb_002387_020

Information

Type -
Description -
Location Contig2387: 21250-23728
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25004: 21307-21639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_020 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_001452_140 0.1071256285 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
3 Hb_003751_060 0.1370198722 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
4 Hb_035947_010 0.1538892603 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
5 Hb_000406_040 0.1629001167 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
6 Hb_000487_100 0.1651405638 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
7 Hb_003878_120 0.1675261473 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
8 Hb_027380_160 0.1722106167 - - -
9 Hb_000364_180 0.1728938303 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
10 Hb_001083_030 0.1735868541 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
11 Hb_000879_130 0.1802143916 - - -
12 Hb_012132_030 0.1812083086 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
13 Hb_004226_020 0.1814007911 - - -
14 Hb_000187_090 0.1839237332 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
15 Hb_000477_030 0.1857442688 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
16 Hb_003327_030 0.1866416216 - - Hsc70-interacting protein, putative [Ricinus communis]
17 Hb_005505_050 0.1882235296 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
18 Hb_153258_010 0.1889248423 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
19 Hb_003462_030 0.1890909375 - - hypothetical protein UMN_5210_01, partial [Pinus radiata]
20 Hb_003097_190 0.1893204627 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002387_020 Hb_002387_020 Hb_001452_140 Hb_001452_140 Hb_002387_020--Hb_001452_140 Hb_003751_060 Hb_003751_060 Hb_002387_020--Hb_003751_060 Hb_035947_010 Hb_035947_010 Hb_002387_020--Hb_035947_010 Hb_000406_040 Hb_000406_040 Hb_002387_020--Hb_000406_040 Hb_000487_100 Hb_000487_100 Hb_002387_020--Hb_000487_100 Hb_003878_120 Hb_003878_120 Hb_002387_020--Hb_003878_120 Hb_019973_030 Hb_019973_030 Hb_001452_140--Hb_019973_030 Hb_003751_110 Hb_003751_110 Hb_001452_140--Hb_003751_110 Hb_004226_020 Hb_004226_020 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_096962_020 Hb_096962_020 Hb_001452_140--Hb_096962_020 Hb_004512_020 Hb_004512_020 Hb_003751_060--Hb_004512_020 Hb_003751_060--Hb_035947_010 Hb_001754_240 Hb_001754_240 Hb_003751_060--Hb_001754_240 Hb_003097_190 Hb_003097_190 Hb_003751_060--Hb_003097_190 Hb_000933_150 Hb_000933_150 Hb_003751_060--Hb_000933_150 Hb_003327_030 Hb_003327_030 Hb_035947_010--Hb_003327_030 Hb_097433_010 Hb_097433_010 Hb_035947_010--Hb_097433_010 Hb_002918_310 Hb_002918_310 Hb_035947_010--Hb_002918_310 Hb_001083_030 Hb_001083_030 Hb_035947_010--Hb_001083_030 Hb_000406_040--Hb_001083_030 Hb_012132_030 Hb_012132_030 Hb_000406_040--Hb_012132_030 Hb_165350_010 Hb_165350_010 Hb_000406_040--Hb_165350_010 Hb_000406_040--Hb_000487_100 Hb_017168_010 Hb_017168_010 Hb_000406_040--Hb_017168_010 Hb_000406_040--Hb_003097_190 Hb_003125_060 Hb_003125_060 Hb_000487_100--Hb_003125_060 Hb_080147_030 Hb_080147_030 Hb_000487_100--Hb_080147_030 Hb_000685_080 Hb_000685_080 Hb_000487_100--Hb_000685_080 Hb_005725_020 Hb_005725_020 Hb_000487_100--Hb_005725_020 Hb_000740_070 Hb_000740_070 Hb_000487_100--Hb_000740_070 Hb_005399_020 Hb_005399_020 Hb_000487_100--Hb_005399_020 Hb_000187_090 Hb_000187_090 Hb_003878_120--Hb_000187_090 Hb_000742_250 Hb_000742_250 Hb_003878_120--Hb_000742_250 Hb_006649_080 Hb_006649_080 Hb_003878_120--Hb_006649_080 Hb_000041_150 Hb_000041_150 Hb_003878_120--Hb_000041_150 Hb_000364_180 Hb_000364_180 Hb_003878_120--Hb_000364_180 Hb_153258_010 Hb_153258_010 Hb_003878_120--Hb_153258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00175 2.32541 1.17223 0.256575 5.9725 1.19856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.282 0.821996 3.3051 0.991544 0.454519

CAGE analysis