Hb_002387_080

Information

Type -
Description -
Location Contig2387: 79829-80598
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07570g
description hypothetical protein
nr
ID KDP43089.1
description hypothetical protein JCGZ_25275 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25275 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25010: 79049-79218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_080 0.0 - - hypothetical protein JCGZ_25275 [Jatropha curcas]
2 Hb_008246_090 0.2100718751 - - -
3 Hb_000483_040 0.217259213 - - Cell division protein ftsH, putative [Ricinus communis]
4 Hb_003494_060 0.2230094597 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
5 Hb_000179_240 0.2238294632 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
6 Hb_012725_040 0.2301302441 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_000277_060 0.2305583178 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_005488_120 0.2342873373 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
9 Hb_003038_010 0.2417687225 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_005656_140 0.2430748625 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
11 Hb_000809_080 0.2438356246 - - 50S ribosomal protein L25, putative [Ricinus communis]
12 Hb_185513_010 0.2447129476 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_080 0.244878128 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
14 Hb_005203_020 0.2476756979 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
15 Hb_012760_010 0.2490821901 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
16 Hb_002205_010 0.2495935541 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
17 Hb_001141_360 0.2498056374 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
18 Hb_001258_150 0.2506635103 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
19 Hb_103788_010 0.2506998545 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_001472_130 0.2511630118 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]

Gene co-expression network

sample Hb_002387_080 Hb_002387_080 Hb_008246_090 Hb_008246_090 Hb_002387_080--Hb_008246_090 Hb_000483_040 Hb_000483_040 Hb_002387_080--Hb_000483_040 Hb_003494_060 Hb_003494_060 Hb_002387_080--Hb_003494_060 Hb_000179_240 Hb_000179_240 Hb_002387_080--Hb_000179_240 Hb_012725_040 Hb_012725_040 Hb_002387_080--Hb_012725_040 Hb_000277_060 Hb_000277_060 Hb_002387_080--Hb_000277_060 Hb_006414_020 Hb_006414_020 Hb_008246_090--Hb_006414_020 Hb_003226_080 Hb_003226_080 Hb_008246_090--Hb_003226_080 Hb_000803_060 Hb_000803_060 Hb_008246_090--Hb_000803_060 Hb_001258_150 Hb_001258_150 Hb_008246_090--Hb_001258_150 Hb_056012_010 Hb_056012_010 Hb_008246_090--Hb_056012_010 Hb_181824_010 Hb_181824_010 Hb_008246_090--Hb_181824_010 Hb_000483_040--Hb_003494_060 Hb_028207_040 Hb_028207_040 Hb_000483_040--Hb_028207_040 Hb_012760_010 Hb_012760_010 Hb_000483_040--Hb_012760_010 Hb_000069_230 Hb_000069_230 Hb_000483_040--Hb_000069_230 Hb_001369_570 Hb_001369_570 Hb_000483_040--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000483_040--Hb_003078_050 Hb_001141_360 Hb_001141_360 Hb_003494_060--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_003494_060--Hb_001865_060 Hb_003494_060--Hb_012725_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080 Hb_002685_200 Hb_002685_200 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_012725_040--Hb_001865_060 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_012725_040--Hb_001258_150 Hb_012725_040--Hb_001141_360 Hb_000072_330 Hb_000072_330 Hb_000277_060--Hb_000072_330 Hb_020400_040 Hb_020400_040 Hb_000277_060--Hb_020400_040 Hb_000277_060--Hb_000179_240 Hb_002110_240 Hb_002110_240 Hb_000277_060--Hb_002110_240 Hb_000634_070 Hb_000634_070 Hb_000277_060--Hb_000634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.51213 0.30204 0.276524 0.295477 0.256236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20046 0.157546 0.137873 0.161474 0

CAGE analysis