Hb_002388_010

Information

Type -
Description -
Location Contig2388: 1473-2159
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002388_010 0.0 - - -
2 Hb_000111_030 0.114349633 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
3 Hb_002192_090 0.1263360825 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
4 Hb_133724_010 0.1269328404 - - conserved hypothetical protein [Ricinus communis]
5 Hb_066913_010 0.1360347216 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
6 Hb_073799_010 0.1463936604 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003551_010 0.156144006 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
8 Hb_001518_070 0.1561900633 - - conserved hypothetical protein [Ricinus communis]
9 Hb_182713_020 0.1562869261 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
10 Hb_130613_010 0.1569631697 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
11 Hb_011942_010 0.1593631496 - - conserved hypothetical protein [Ricinus communis]
12 Hb_146675_010 0.160527443 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
13 Hb_178620_010 0.1628794505 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
14 Hb_001829_040 0.1738836203 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
15 Hb_001747_030 0.1741284358 - - hypothetical protein F383_08210 [Gossypium arboreum]
16 Hb_004669_030 0.1748090563 - - -
17 Hb_075764_010 0.1756446684 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
18 Hb_000363_330 0.1770595811 - - -
19 Hb_000028_060 0.1773075763 - - -
20 Hb_003925_070 0.1796913193 - - ATOZI1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002388_010 Hb_002388_010 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_002192_090 Hb_002192_090 Hb_002388_010--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002388_010--Hb_133724_010 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_130613_010 Hb_130613_010 Hb_000111_030--Hb_130613_010 Hb_001747_030 Hb_001747_030 Hb_000111_030--Hb_001747_030 Hb_182713_020 Hb_182713_020 Hb_000111_030--Hb_182713_020 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_000111_030--Hb_002192_090 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002192_090--Hb_001747_030 Hb_000053_030 Hb_000053_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_133724_010--Hb_130613_010 Hb_133724_010--Hb_001518_070 Hb_002687_080 Hb_002687_080 Hb_066913_010--Hb_002687_080 Hb_066913_010--Hb_133724_010 Hb_066913_010--Hb_002192_090 Hb_000363_330 Hb_000363_330 Hb_066913_010--Hb_000363_330 Hb_145629_010 Hb_145629_010 Hb_066913_010--Hb_145629_010 Hb_073799_010--Hb_182713_020 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_013394_100 Hb_013394_100 Hb_073799_010--Hb_013394_100 Hb_011287_040 Hb_011287_040 Hb_073799_010--Hb_011287_040 Hb_009051_020 Hb_009051_020 Hb_003551_010--Hb_009051_020 Hb_003551_010--Hb_013394_100 Hb_003551_010--Hb_000111_030 Hb_003551_010--Hb_066913_010 Hb_003551_010--Hb_182713_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.9442 55.3225 67.901 294.53 51.5015 165.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.9646 112.367 10.3317 30.1062 12.2972

CAGE analysis