Hb_002388_060

Information

Type -
Description -
Location Contig2388: 62059-63931
Sequence    

Annotation

kegg
ID rcu:RCOM_0701460
description hypothetical protein
nr
ID XP_002523528.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SC09
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0701460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25012: 62058-63876 , PASA_asmbl_25013: 62058-63851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002388_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007545_210 0.0917753055 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
3 Hb_000523_020 0.1075442093 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
4 Hb_000416_100 0.1105863928 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
5 Hb_000270_400 0.118142625 - - lipase, putative [Ricinus communis]
6 Hb_032264_130 0.1187177772 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
7 Hb_001454_390 0.1299687086 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
8 Hb_170116_010 0.1323219851 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
9 Hb_003636_090 0.1390777819 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
10 Hb_002025_230 0.1427861627 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
11 Hb_001195_110 0.1428218974 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
12 Hb_017111_010 0.1445415657 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
13 Hb_011616_030 0.1445904091 - - -
14 Hb_004738_090 0.1448719796 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000376_150 0.1448779633 - - O-acyltransferase WSD1 [Gossypium arboreum]
16 Hb_001780_060 0.1463244234 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
17 Hb_000186_100 0.1467320824 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
18 Hb_003304_080 0.151338934 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
19 Hb_000365_350 0.1526107545 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
20 Hb_000138_190 0.1579398408 - - omega-6 fatty acid desaturase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002388_060 Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_002388_060--Hb_007545_210 Hb_000523_020 Hb_000523_020 Hb_002388_060--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_032264_130 Hb_032264_130 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_007545_210--Hb_000270_400 Hb_007545_210--Hb_000523_020 Hb_007545_210--Hb_000416_100 Hb_002627_060 Hb_002627_060 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_000523_020--Hb_000270_400 Hb_126669_010 Hb_126669_010 Hb_000523_020--Hb_126669_010 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_000523_020--Hb_002627_060 Hb_001825_010 Hb_001825_010 Hb_000416_100--Hb_001825_010 Hb_000714_020 Hb_000714_020 Hb_000416_100--Hb_000714_020 Hb_004738_090 Hb_004738_090 Hb_000416_100--Hb_004738_090 Hb_000365_350 Hb_000365_350 Hb_000416_100--Hb_000365_350 Hb_000270_400--Hb_126669_010 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000172_610 Hb_000172_610 Hb_000270_400--Hb_000172_610 Hb_000270_400--Hb_002627_060 Hb_011616_030 Hb_011616_030 Hb_032264_130--Hb_011616_030 Hb_053262_010 Hb_053262_010 Hb_032264_130--Hb_053262_010 Hb_019936_010 Hb_019936_010 Hb_032264_130--Hb_019936_010 Hb_032264_130--Hb_007545_210 Hb_032264_130--Hb_170116_010 Hb_001780_060 Hb_001780_060 Hb_001454_390--Hb_001780_060 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_001454_390--Hb_170116_010 Hb_002875_090 Hb_002875_090 Hb_001454_390--Hb_002875_090 Hb_003253_010 Hb_003253_010 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
402.479 11.9599 8.81271 13.0689 162.745 140.167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.881 52.2446 76.8982 7.35044 8.1041

CAGE analysis