Hb_002391_050

Information

Type -
Description -
Location Contig2391: 37588-38994
Sequence    

Annotation

kegg
ID rcu:RCOM_0872160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012065351.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
swissprot
ID Q84J71
description Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
trembl
ID A0A067LHS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22361 PE=4 SV=1
Gene Ontology
ID GO:0005622
description pentatricopeptide repeat-containing protein at2g17670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
2 Hb_000196_060 0.0668093448 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
3 Hb_001008_050 0.0788300567 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
4 Hb_015978_100 0.080039641 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
5 Hb_001935_160 0.0813179595 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
6 Hb_000925_090 0.0909237878 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
7 Hb_003124_100 0.0924047364 - - -
8 Hb_003506_050 0.0973796797 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_156850_090 0.0976770092 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000320_470 0.0987031597 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_133702_020 0.0993323757 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000181_100 0.0996254344 - - PREDICTED: protein starmaker [Jatropha curcas]
13 Hb_000252_050 0.0999468857 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
14 Hb_000086_690 0.1000267452 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
15 Hb_000568_050 0.1009060146 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
16 Hb_001133_030 0.1033007146 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
17 Hb_000731_010 0.1053695048 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
18 Hb_001008_070 0.1053857116 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
19 Hb_001377_100 0.1054532602 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
20 Hb_009486_090 0.1059021711 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002391_050 Hb_002391_050 Hb_000196_060 Hb_000196_060 Hb_002391_050--Hb_000196_060 Hb_001008_050 Hb_001008_050 Hb_002391_050--Hb_001008_050 Hb_015978_100 Hb_015978_100 Hb_002391_050--Hb_015978_100 Hb_001935_160 Hb_001935_160 Hb_002391_050--Hb_001935_160 Hb_000925_090 Hb_000925_090 Hb_002391_050--Hb_000925_090 Hb_003124_100 Hb_003124_100 Hb_002391_050--Hb_003124_100 Hb_009486_090 Hb_009486_090 Hb_000196_060--Hb_009486_090 Hb_001377_100 Hb_001377_100 Hb_000196_060--Hb_001377_100 Hb_000196_060--Hb_000925_090 Hb_006031_010 Hb_006031_010 Hb_000196_060--Hb_006031_010 Hb_011174_020 Hb_011174_020 Hb_000196_060--Hb_011174_020 Hb_000320_470 Hb_000320_470 Hb_001008_050--Hb_000320_470 Hb_000181_100 Hb_000181_100 Hb_001008_050--Hb_000181_100 Hb_001008_050--Hb_001935_160 Hb_001008_070 Hb_001008_070 Hb_001008_050--Hb_001008_070 Hb_089246_010 Hb_089246_010 Hb_001008_050--Hb_089246_010 Hb_000183_050 Hb_000183_050 Hb_015978_100--Hb_000183_050 Hb_000679_270 Hb_000679_270 Hb_015978_100--Hb_000679_270 Hb_015978_100--Hb_001935_160 Hb_005563_060 Hb_005563_060 Hb_015978_100--Hb_005563_060 Hb_000252_050 Hb_000252_050 Hb_015978_100--Hb_000252_050 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_012055_110 Hb_012055_110 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_003124_100--Hb_000925_090 Hb_009252_040 Hb_009252_040 Hb_003124_100--Hb_009252_040 Hb_143489_010 Hb_143489_010 Hb_003124_100--Hb_143489_010 Hb_003124_100--Hb_000320_470 Hb_003124_100--Hb_002600_060 Hb_003506_050 Hb_003506_050 Hb_003124_100--Hb_003506_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13359 3.19415 1.90903 2.3889 1.65206 2.78281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.739847 1.11116 1.23947 2.73762 4.52588

CAGE analysis