Hb_002391_090

Information

Type -
Description -
Location Contig2391: 62938-66153
Sequence    

Annotation

kegg
ID rcu:RCOM_0871920
description protein with unknown function
nr
ID XP_012065349.1
description PREDICTED: IST1-like protein [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067L954
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22355 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ist1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_090 0.0 - - PREDICTED: IST1-like protein [Jatropha curcas]
2 Hb_151939_010 0.3003912063 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
3 Hb_000788_050 0.3129281685 - - Chloride channel protein CLC-c [Populus trichocarpa]
4 Hb_150766_020 0.3172986552 - - hypothetical protein VITISV_030841 [Vitis vinifera]
5 Hb_073799_010 0.3231538647 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007524_050 0.3248718933 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
7 Hb_004242_210 0.3278804621 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
8 Hb_030784_010 0.3290920305 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
9 Hb_000157_080 0.3299394064 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
10 Hb_005684_010 0.3317234087 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
11 Hb_000640_110 0.3389027452 - - -
12 Hb_001247_190 0.3426589811 - - unnamed protein product [Vitis vinifera]
13 Hb_063480_010 0.3441895415 - - PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
14 Hb_001437_090 0.3477046815 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
15 Hb_001890_030 0.3490621073 - - -
16 Hb_000317_130 0.3496822677 - - vacuolar membrane protein pep3, putative [Ricinus communis]
17 Hb_001421_050 0.3497088683 - - -
18 Hb_000094_030 0.3518409542 - - -
19 Hb_000174_050 0.3562571911 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
20 Hb_154600_010 0.3618828387 - - hypothetical protein JCGZ_17786 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_090 Hb_002391_090 Hb_151939_010 Hb_151939_010 Hb_002391_090--Hb_151939_010 Hb_000788_050 Hb_000788_050 Hb_002391_090--Hb_000788_050 Hb_150766_020 Hb_150766_020 Hb_002391_090--Hb_150766_020 Hb_073799_010 Hb_073799_010 Hb_002391_090--Hb_073799_010 Hb_007524_050 Hb_007524_050 Hb_002391_090--Hb_007524_050 Hb_004242_210 Hb_004242_210 Hb_002391_090--Hb_004242_210 Hb_143800_010 Hb_143800_010 Hb_151939_010--Hb_143800_010 Hb_063480_010 Hb_063480_010 Hb_151939_010--Hb_063480_010 Hb_002291_040 Hb_002291_040 Hb_151939_010--Hb_002291_040 Hb_003925_030 Hb_003925_030 Hb_151939_010--Hb_003925_030 Hb_005542_090 Hb_005542_090 Hb_151939_010--Hb_005542_090 Hb_088428_010 Hb_088428_010 Hb_151939_010--Hb_088428_010 Hb_000788_050--Hb_007524_050 Hb_030784_010 Hb_030784_010 Hb_000788_050--Hb_030784_010 Hb_005928_090 Hb_005928_090 Hb_000788_050--Hb_005928_090 Hb_172921_010 Hb_172921_010 Hb_000788_050--Hb_172921_010 Hb_002379_040 Hb_002379_040 Hb_000788_050--Hb_002379_040 Hb_000157_080 Hb_000157_080 Hb_150766_020--Hb_000157_080 Hb_179812_010 Hb_179812_010 Hb_150766_020--Hb_179812_010 Hb_004195_230 Hb_004195_230 Hb_150766_020--Hb_004195_230 Hb_002025_210 Hb_002025_210 Hb_150766_020--Hb_002025_210 Hb_000994_110 Hb_000994_110 Hb_150766_020--Hb_000994_110 Hb_009393_190 Hb_009393_190 Hb_150766_020--Hb_009393_190 Hb_002388_010 Hb_002388_010 Hb_073799_010--Hb_002388_010 Hb_182713_020 Hb_182713_020 Hb_073799_010--Hb_182713_020 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_013394_100 Hb_013394_100 Hb_073799_010--Hb_013394_100 Hb_011287_040 Hb_011287_040 Hb_073799_010--Hb_011287_040 Hb_156635_050 Hb_156635_050 Hb_007524_050--Hb_156635_050 Hb_012094_030 Hb_012094_030 Hb_007524_050--Hb_012094_030 Hb_005489_010 Hb_005489_010 Hb_007524_050--Hb_005489_010 Hb_003554_020 Hb_003554_020 Hb_007524_050--Hb_003554_020 Hb_000640_110 Hb_000640_110 Hb_004242_210--Hb_000640_110 Hb_005597_010 Hb_005597_010 Hb_004242_210--Hb_005597_010 Hb_003643_030 Hb_003643_030 Hb_004242_210--Hb_003643_030 Hb_002217_490 Hb_002217_490 Hb_004242_210--Hb_002217_490 Hb_002311_460 Hb_002311_460 Hb_004242_210--Hb_002311_460 Hb_000737_020 Hb_000737_020 Hb_004242_210--Hb_000737_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0300971 0.0466817 0.0196327 0.034443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0352116 0 0.0141281 0

CAGE analysis