Hb_002391_110

Information

Type -
Description -
Location Contig2391: 67998-69149
Sequence    

Annotation

kegg
ID pop:POPTR_0012s12840g
description POPTRDRAFT_423186; hypothetical protein
nr
ID XP_012065348.1
description PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q5RCE6
description Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2
trembl
ID A0A067L5R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22354 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribosomal l1 domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25051: 67883-70210
cDNA
(Sanger)
(ID:Location)		 004_J19.ab1: 68789-69298 , 018_I01.ab1: 67883-68471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_110 0.0 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
2 Hb_000599_120 0.0644135504 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
3 Hb_002681_140 0.070778806 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
4 Hb_127979_010 0.0731037348 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
5 Hb_000085_340 0.0790399895 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
6 Hb_026048_090 0.0863172948 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000176_140 0.0877775353 - - PREDICTED: bystin [Jatropha curcas]
8 Hb_003352_050 0.0893543921 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
9 Hb_002067_160 0.0907175687 - - Protein MLO, putative [Ricinus communis]
10 Hb_162275_010 0.0924754434 - - -
11 Hb_006637_060 0.0924886789 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
12 Hb_000057_060 0.0926559578 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
13 Hb_003638_140 0.094622009 - - protein binding protein, putative [Ricinus communis]
14 Hb_000365_360 0.0954276227 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
15 Hb_001433_170 0.0959688323 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
16 Hb_035524_030 0.100918749 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014568_030 0.1028498094 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_002377_040 0.1029317302 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_003055_050 0.1032040444 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
20 Hb_000085_280 0.103255132 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_002391_110 Hb_002391_110 Hb_000599_120 Hb_000599_120 Hb_002391_110--Hb_000599_120 Hb_002681_140 Hb_002681_140 Hb_002391_110--Hb_002681_140 Hb_127979_010 Hb_127979_010 Hb_002391_110--Hb_127979_010 Hb_000085_340 Hb_000085_340 Hb_002391_110--Hb_000085_340 Hb_026048_090 Hb_026048_090 Hb_002391_110--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_002391_110--Hb_000176_140 Hb_000057_060 Hb_000057_060 Hb_000599_120--Hb_000057_060 Hb_000984_180 Hb_000984_180 Hb_000599_120--Hb_000984_180 Hb_000365_360 Hb_000365_360 Hb_000599_120--Hb_000365_360 Hb_000696_110 Hb_000696_110 Hb_000599_120--Hb_000696_110 Hb_000599_120--Hb_127979_010 Hb_002681_140--Hb_000176_140 Hb_000284_200 Hb_000284_200 Hb_002681_140--Hb_000284_200 Hb_002044_090 Hb_002044_090 Hb_002681_140--Hb_002044_090 Hb_002681_140--Hb_127979_010 Hb_011496_010 Hb_011496_010 Hb_002681_140--Hb_011496_010 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_127979_010--Hb_000057_060 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_000085_340--Hb_026048_090 Hb_000085_340--Hb_000176_140 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_026048_090--Hb_000057_060 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.694 16.0342 12.396 15.5497 176.814 247.904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.568 91.2319 105.394 44.879 21.1757

CAGE analysis