Hb_002391_220

Information

Type -
Description -
Location Contig2391: 146111-149119
Sequence    

Annotation

kegg
ID rcu:RCOM_0871230
description hypothetical protein
nr
ID XP_012065339.1
description PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
swissprot
ID Q8GXB1
description UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1
trembl
ID A0A067L947
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22345 PE=4 SV=1
Gene Ontology
ID GO:0009941
description upf0548 protein at2g17695

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25056: 146262-149117 , PASA_asmbl_25057: 146262-149112 , PASA_asmbl_25059: 146261-146965 , PASA_asmbl_25060: 147711-147834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_220 0.0 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
2 Hb_000260_200 0.0750702543 - - -
3 Hb_000069_140 0.0832230251 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
4 Hb_000445_490 0.0845738642 - - -
5 Hb_001304_140 0.0881287461 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_000270_720 0.0889066867 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
7 Hb_000599_280 0.0926826353 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
8 Hb_003777_210 0.0930071395 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
9 Hb_120823_010 0.0961668653 - - -
10 Hb_001155_040 0.0994031544 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
11 Hb_001424_020 0.0999535643 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
12 Hb_000062_390 0.103555461 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
13 Hb_011377_020 0.1036789797 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
14 Hb_012539_020 0.1059677763 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
15 Hb_000789_110 0.107410727 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
16 Hb_076693_040 0.1074250777 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
17 Hb_007317_160 0.1091001055 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
18 Hb_000163_210 0.1091337942 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
19 Hb_002316_120 0.1092057628 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
20 Hb_000389_080 0.1110899381 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]

Gene co-expression network

sample Hb_002391_220 Hb_002391_220 Hb_000260_200 Hb_000260_200 Hb_002391_220--Hb_000260_200 Hb_000069_140 Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_000270_720 Hb_000270_720 Hb_002391_220--Hb_000270_720 Hb_000599_280 Hb_000599_280 Hb_002391_220--Hb_000599_280 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_000069_140--Hb_001424_020 Hb_000069_140--Hb_000270_720 Hb_000318_160 Hb_000318_160 Hb_000445_490--Hb_000318_160 Hb_000928_130 Hb_000928_130 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_076693_040 Hb_076693_040 Hb_001304_140--Hb_076693_040 Hb_010582_010 Hb_010582_010 Hb_001304_140--Hb_010582_010 Hb_054074_010 Hb_054074_010 Hb_001304_140--Hb_054074_010 Hb_001304_140--Hb_001424_020 Hb_000159_070 Hb_000159_070 Hb_001304_140--Hb_000159_070 Hb_000789_110 Hb_000789_110 Hb_000270_720--Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000270_720--Hb_000599_280 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000599_280--Hb_004007_180 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.12883 1.95968 8.51016 12.2707 5.95238 8.45863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.4506 56.7257 18.2346 9.13989 12.1561

CAGE analysis